RNA id: AMCG00009909



Basic Information


Item Value
RNA id AMCG00009909
length 1033
RNA type mRNA
GC content 0.52
exon number 6
gene id AMCG00009909
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5509084 ~ 5525562 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TAATAATTCAAGAGTCAGTCAGGGAATTTCAGAAGTTGATTCCGGTActgttaataattacatttccgGAAAGTTATCTTTGTAATTCCTAAACAAAACACTTCTCGTGTCCAGTTAATGCTAAGAGAGATCAGCAGGACTGGATTCATTCCGACACTATAAAAGCTTTGAGATACTTGTGATAGACACTCCAAGGAAGCTAAAGGggctaaagaaaaaaaacaaaatgAGGGTGCTGTGGGCTTTGCCATTGTTCAGTGTGTTGCTGCTAGACGCCGTTGTGATGCTCTCCGCGGTGGAGACTCCAATCTGCCTGCAGGGGCCCCCAGGATCCCCCGGACTGCCAGGGCCACAAGGGAGAGACGGCAGAGATGCTGCCCTTTGCTCGAAGGGGGAGAAAGGGGACCCAGTAAAGGGGCTCTATTTCTTCACGTACCACTTTACGTGTTATCAAAAGGATGTGTGGGTGACGCTAAGGAAGAATGCGGACATCGTCCAGTTCACTTTCATGAACCATCTTCAGAACACCGTGCAGTCGTCGGGCTCGGCGGTTGTGCCCCTGGCCTCTGACGACGAGAGGATCAGTGCCGAGGGTACACATTCAGCGGGACAGAAAGAAGACGACAACAGCGAGCGCGATGTTTTGTCGAAACCAGACGACCAGGGCTACGGTGGCCAGGGGCTCAGCCTTGGAAATGGAGATCCGGCGGGGGAAGTTCAGACGGAGCATATTCCTGGACACGCTGCAGGTGAAGTGCACTGGGCAGACTGGGCAGACTGGGCAGAAAAGCGACTTCTGGGGTCAGACCCGAGTGGGGGTGTGGGAATCAAACAAACCACGCGTTTAGATGTTGGCTGTGATTTCTGCTACATATGGATACTGACTCAATGGGAACTTCAGGAGTTTAGCAACCTGTTCCAATGTGGGGTGATTGTGCTGGTCAGCTTTTCCCTGGCTGTGGTGGAAAGCGCTGGGCAGAGCAGGGCAGAGCCAGCTCGAGGAATGATTGAATCAGCCCAGCTTAAAACGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU95334 lncRNA upstream 46273 5462523 ~ 5462811 (+) True G76346
TU95253 lncRNA upstream 260903 5243727 ~ 5248181 (+) False AMCG00009897
TU95233 lncRNA upstream 280298 5158388 ~ 5228786 (+) True G76266
TU95199 lncRNA upstream 588238 4911270 ~ 4920846 (+) False AMCG00009898
TU95119 lncRNA upstream 1255530 4253237 ~ 4253554 (+) True G76186
TU95410 lncRNA downstream 218695 5744257 ~ 5751212 (+) True G76408
TU95417 lncRNA downstream 242315 5767877 ~ 5769052 (+) False AMCG00009915
TU95419 lncRNA downstream 244693 5770255 ~ 5771092 (+) True G76417
TU95420 lncRNA downstream 246112 5771674 ~ 5771949 (+) True G76418
TU95439 lncRNA downstream 250394 5775956 ~ 5776174 (+) True G76434
AMCG00009905 mRNA upstream 49200 5458286 ~ 5459884 (+) True AMCG00009905
AMCG00009906 mRNA upstream 60765 5438467 ~ 5448319 (+) True AMCG00009906
AMCG00009897 mRNA upstream 260903 5232632 ~ 5248181 (+) True AMCG00009897
AMCG00009904 mRNA upstream 364148 5142003 ~ 5144936 (+) True AMCG00009904
AMCG00009896 mRNA upstream 495754 5011378 ~ 5013330 (+) True AMCG00009896
AMCG00009911 mRNA downstream 37413 5562975 ~ 5594007 (+) True AMCG00009911
AMCG00009914 mRNA downstream 69876 5595438 ~ 5602983 (+) True AMCG00009914
AMCG00009916 mRNA downstream 192136 5717698 ~ 5744142 (+) True AMCG00009916
AMCG00009915 mRNA downstream 240775 5766337 ~ 5768059 (+) True AMCG00009915
AMCG00009919 mRNA downstream 260863 5786425 ~ 5794926 (+) True AMCG00009919
TU94664 other upstream 4145250 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4174034 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4181520 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 4471642 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 4637349 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5624064 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 6175144 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 10115399 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 10531969 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11698320 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile