RNA id: AMCG00009911


Basic Information

Item Value
RNA id AMCG00009911
length 2082
RNA type mRNA
GC content 0.65
exon number 13
gene id AMCG00009911
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5562975 ~ 5594007 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTACCCAGCCGCGCCAAGACAAATTAGCCCTGCAGACGTTAACTGGGGCCGACGCTCGGCAGACTCGCCAGAGCAGCCGCTCAGCCGGAGCCCAGTCTCTGCAGCAGGCGGGGGCCGTGGCTCTTGGCTGGCAGCGGGAGACCAGGCAGTCGAGGCAGTGTGTTGACATCGAGTGTGCCAGCGCCGGCGGGCACCAGACTGTGCGAGACTCCCGCCGCTGCGTGCTTCGACTTGGCAGCCCCAGAGAGAGAGCCGTGCTGCAGTGCTGGCCGGGGAGGTGGTCTGTGATCGTGAGTGGGACTCACTGCCGGCCTCCGAGTGGTCTGCAGAGCCTGGCAGGGTCTCACACACACCGCTGCCTGTTCTCTACCGTGCAGGACAGCGACATCCAGAAGAAGATCGACTATGAAATCCGTATGCGGGACGGTGCCTGCAAGTTGCTGGCTGCCTGCTCTCAGAGGGACCAGGCCCTGGAGGCGGCGAAGAGCCTACTGACCTGCAACGCCCGCATCATGGCCTACATGTCCGAGCTGCAGAGGATGAAGGAGGCGCAGGTCATGCAGAGAGTGGCACGAAGGTCCTCAGATGCTGGGCCCATGGACGACCGACTGCCTTGCAAGGGGAAAGTGGCCATCTCAGATCTGCGAATCCCACTGATGTGGAAAGACACGGAATACTTCAAGAACAAAGGAGAGCTGCACCGCTGTGCTGTGTTCTGCCTGCTGCAGCTGGGGGGAGAGATCTTCGACACAGACATGGTGATGGTGGACAGGACACTCACCGACATCTGCTTCGACAACACCATCGTCTTTGCGGAGGCCGGCCCCGGGTTCGAGCTGCGAGTGGAGCTGTACAGCTGCTGCACAGAGGACGAGTTCTCAGTGGGCAACACACCACGGAAGCTGGCCAGTAAGCTGAGCAGCTCGCTGGGCCGCTCCTCAGGGAAGAAGGTCCGGGCGGCACTGGAGCCGGGAGCGGGCAGCCCGGTCAGTAACGGAGGGAGCAGCCCCCTGCTACTGCCCTCGCCCTCTGTGCCGGGCCCCAAGTACCATCTCCTGGCACAGACCTCTCTGACGCTGGCACACGTACAGGACAGCTTCCGCACCCAGGACCTCTCCATCTCTGGCAACGAGGAGTGCTCGTACTGGCTGCCCCTGTATGGCAGTGTGTGCTGCCGCCTGGCTGCTCAGCCCCTGTGCATGACCCAGCAGATGATGAGCGGCTGTTTGAAGGTCAAGGAGACGCGGATCCGTGCCACAGAGAAGGACCCCCAGAGCAAAGCCCAGAGCATCTCCATCAGCAACCAGTATGGCGGGGAGGAGGTGACTCACACCCTGGTGGCCGAGAGCCGCGAAGAGACGCAGCGCTGGATGGAGGCTTTCTGGCAGCAATTCTACGACATGAGCCAGTGGAAGCAGTGCTGCGACGAGCTGATGAAGATCGAGGTACCATCGCCACGGAAACCGCCCATCGTCATGGCGAAGCAGGGTTCGCTTTACCACGAGATGGTGACGGACATCCTGACCCGACGGGTGCAGGACTTTGATTTGCGGGGCCCACTGGGAGAGCTCCCCCCCTGGATGGCGCTCTTCGAGGCCTCCCCTACGCAACAGCACTGCCCCCGGGTGGCCGGCCACAGCCCCCGCTCCCACTCCCGGCCTCCGCACAGCCCCCGGGCCGGCCCGCCCTCCTCGGACGCCAGTCTGACGTCGGACAGCGACAGCCCCTGCAGCGCCAGCCCCTGCTCCCGCCACGCCTGGGCCGAGTCCCCGCTGCCCCGCACCCGTCCACGCACGCTCTCCCTTGACGCCAAGCTTAGCAGCCTGAAGGGCCGGGGCTACGGGGGCCTGGCCTGCACGTGccactccccaccccccctctgCCCCTCCTCCGCCATGCAGGCCCCCCAGCCTGGCCTCTCCTGCGCCAGCTCCACGTCCAGTAACAGCTCCAGTGAGGGCAGCACCACCCCCGAGTCGGATGGCACCCCCTTCCCCCGCCCCGCCCTGGCGCGCCGCAGCCTGAGGAACCTGCGCATCAAGCTGGATCCCCGTAACTGGCTCCAGACACAGGTCTAG

Function

GO: NA

KEGG:

id description
K24024 RTKN; rhotekin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95334 lncRNA upstream 100164 5462523 ~ 5462811 (+) True G76346
TU95253 lncRNA upstream 314794 5243727 ~ 5248181 (+) False AMCG00009897
TU95233 lncRNA upstream 334189 5158388 ~ 5228786 (+) True G76266
TU95199 lncRNA upstream 642129 4911270 ~ 4920846 (+) False AMCG00009898
TU95119 lncRNA upstream 1309421 4253237 ~ 4253554 (+) True G76186
TU95410 lncRNA downstream 150250 5744257 ~ 5751212 (+) True G76408
TU95417 lncRNA downstream 173870 5767877 ~ 5769052 (+) False AMCG00009915
TU95419 lncRNA downstream 176248 5770255 ~ 5771092 (+) True G76417
TU95420 lncRNA downstream 177667 5771674 ~ 5771949 (+) True G76418
TU95439 lncRNA downstream 181949 5775956 ~ 5776174 (+) True G76434
AMCG00009909 mRNA upstream 37413 5509084 ~ 5525562 (+) True AMCG00009909
AMCG00009905 mRNA upstream 103091 5458286 ~ 5459884 (+) True AMCG00009905
AMCG00009906 mRNA upstream 114656 5438467 ~ 5448319 (+) True AMCG00009906
AMCG00009897 mRNA upstream 314794 5232632 ~ 5248181 (+) True AMCG00009897
AMCG00009904 mRNA upstream 418039 5142003 ~ 5144936 (+) True AMCG00009904
AMCG00009914 mRNA downstream 1431 5595438 ~ 5602983 (+) True AMCG00009914
AMCG00009916 mRNA downstream 123691 5717698 ~ 5744142 (+) True AMCG00009916
AMCG00009915 mRNA downstream 172330 5766337 ~ 5768059 (+) True AMCG00009915
AMCG00009919 mRNA downstream 192418 5786425 ~ 5794926 (+) True AMCG00009919
AMCG00009923 mRNA downstream 296273 5890280 ~ 5894977 (+) True AMCG00009923
TU94664 other upstream 4199141 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4227925 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4235411 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 4525533 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 4691240 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5555619 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 6106699 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 10046954 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 10463524 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11629875 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060863 True 2016 mRNA 0.55 12 NC_007116.7 43617262 ~ 43682930 (-)
grasscarp (Ctenopharyngodon idella) CI01000039_03782970_03797693.mRNA True 2818 mRNA 0.49 12 CI01000039 3782970 ~ 3798506 (+)