RNA id: AMCG00009915


Basic Information

Item Value
RNA id AMCG00009915
length 1431
RNA type mRNA
GC content 0.64
exon number 2
gene id AMCG00009915
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5766337 ~ 5769052 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCGTTTCACGTCCAAGTCCCGAGCGGACAAGTCCCGTGTCCCCTCCGCCCCCGTGCCCCCTTCAGCCCCCAGCGCAGTCGCCCCTGCAGACATCGTCCCAGGACGCCTCACTGAGTCCGACTGGGTTGCCATGCTGATGCAGGAGGAGGGCGAGGAGGTGGTGGCGGACATTGTGGACAAGCTGATGTCCCGGGTGATGGAGGAGTGCTACAGAGTGTACCTGCAGAGACAGCTGGTGCCGTTCACCGTGTCCCAGGCACGGGAGGCCCTGCTGCAGATGGTGGAGTGGCGTTTCCTGGTGCGGGACGAGGGCGAGGGGCCGGACAGCACCTCCTCCtgggaggaggatgaggagccCCAGCCGTGCAGCACAGACTCCTGGGCTCAGGGCTGTGTGCCCGTCCTGCACACTGGGCTGACACCACGCACCACACTCCCACAGGCGCCCTCTACCAGGGAGCAGACGGCAGCAGGGAGTCCACAGCCCCAGCCTGAGCTACAGCCACTGGAGTCTGGGATGGATGCAGCGAGCATAGCGGTCCCTCTCCAGAATAGACCGGCTGAAATCaaagcagagaagaaaacacTGTCTGGGCCCAAGAAAACAATGCCTCCTTTGCGGATGCCAGCTCCCCCACCTAAAACAGAGCAGAGGAGCAAACAGTTTCCCCACCAAGCACCGCTGCCAACAACCAAAGAGAAGGTCCGCCCCCAGCCCCTGCGGGAGTCCCACACCGAGGCACCCCAGTCTACCCAGCAGGAAGGGCTGGGCCCGCTGCCCTCTCCACCTGCTGCTCCCCGTCCTCCACTCCTGGACGCCACAGCAGGAGGGCGCTCAACTTGGGTTGGTGCAGTGCAGAAGCTGGACCCTGCCCGTCTCCCACGGCACCGCATCTGGCCTGCCTTCGAGGTACTGGAGGCCAACGCCCTGCAGCACCCCCTGGGGAGGACAGCCAGCACCCTGCCAGGAAGGGCCAGGCAAGAGAAGTGGCGAGCAGGGGGTCAGTTTGCTCTCCGCCGCCtggctcctcttcctcctcccactGTGCCAGGTCAGGTCTTGCACCAGGAAGCACAGAAACCACACAGGAGAAGCGTCCTGAAGCCCTTCCCTCTCCCAGACCCTTCCCCTCACCCATCCAATCCAATATACACCCAGGAGGACAGCAGCCCTCCCCGTGGCCCCCTTCCCCTCACTGCCCATCTGCTGCTGGACTCCATGGAGCTGTCCCCTGGAGTGTCCCTCAAGGACCCCCGCTGGCCCAGGACAGGCTCCTGGAGGGAGACCCAGCCCCAGCCCGACTACAGCACAGCTCTGAAGCCCATCAGAAGCACCCTGCCCTCTCCACTCATCTCTCTGGACCAGCTGGTCACAGGACAGCACCCACTGGCGAGCCCCCACACTTCGCTGGCTGGGCAAACTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95410 lncRNA upstream 15125 5744257 ~ 5751212 (+) True G76408
TU95334 lncRNA upstream 303526 5462523 ~ 5462811 (+) True G76346
TU95253 lncRNA upstream 518156 5243727 ~ 5248181 (+) False AMCG00009897
TU95233 lncRNA upstream 537551 5158388 ~ 5228786 (+) True G76266
TU95199 lncRNA upstream 845491 4911270 ~ 4920846 (+) False AMCG00009898
TU95419 lncRNA downstream 2196 5770255 ~ 5771092 (+) True G76417
TU95420 lncRNA downstream 3615 5771674 ~ 5771949 (+) True G76418
TU95439 lncRNA downstream 7897 5775956 ~ 5776174 (+) True G76434
TU95468 lncRNA downstream 129251 5897310 ~ 5900982 (+) True G76460
TU95493 lncRNA downstream 177647 5945706 ~ 5946053 (+) True G76484
AMCG00009916 mRNA upstream 22195 5717698 ~ 5744142 (+) True AMCG00009916
AMCG00009914 mRNA upstream 163354 5595438 ~ 5602983 (+) True AMCG00009914
AMCG00009911 mRNA upstream 172330 5562975 ~ 5594007 (+) True AMCG00009911
AMCG00009909 mRNA upstream 240775 5509084 ~ 5525562 (+) True AMCG00009909
AMCG00009905 mRNA upstream 306453 5458286 ~ 5459884 (+) True AMCG00009905
AMCG00009919 mRNA downstream 18366 5786425 ~ 5794926 (+) True AMCG00009919
AMCG00009923 mRNA downstream 122221 5890280 ~ 5894977 (+) True AMCG00009923
AMCG00009922 mRNA downstream 164962 5933021 ~ 5940090 (+) True AMCG00009922
AMCG00009926 mRNA downstream 218208 5986267 ~ 5998592 (+) True AMCG00009926
AMCG00009929 mRNA downstream 291183 6059242 ~ 6085806 (+) True AMCG00009929
TU94664 other upstream 4402503 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4431287 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4438773 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 4728895 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 4894602 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5381567 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5932647 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9872902 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 10289472 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11455823 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile