RNA id: AMCG00009916


Basic Information

Item Value
RNA id AMCG00009916
length 2589
RNA type mRNA
GC content 0.61
exon number 14
gene id AMCG00009916
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5717698 ~ 5744142 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTAGTAAGGAATACTACAGCTCAGGCAATGAGATGACAAGGCTGCCCACCTCCGCATGGCAGGGTGTGTGGGTTTCCCTGTCTGGAGAGGAGCAACAGATCACCAGTATTCACCCGccactctccttctctctctcttctctccaggCCCTCTCCATGGATATAGACACAGACTATGAGCGGCCCAATGTTGAGACAATAAAGTGCGTGGTGGTGGGAGACAACGCAGTGGGCAAGACTCGACTGATCTGCGCCCGTGCCTGCAACGCCACCCTCACGCAGTACCAGCTACTCGCCACACATGTGCCAACTGTCTGGGCCATCGACCAGTACCGCGTGTGCCAGGAGGTCCTGGAGAGATCTCGAGATGTTGTGGATGAGGTCAGCGTGTCCCTGCGGCTGTGGGACACCTTCGGGGATCACCACAAAGACCGACGCTTCGCTTACGGCAGGTCTGATGTGGTGGTGCTGTGCTTCTCTCTGGCCAACCCCAACTCTCTCCGCCATGTGAAGACCATGTGGTTCCCAGAAATCAAGCACTTCTGTCCCCGCACTCCCATCATCCTTGTGGGCTGCCAGCTGGACCTGCGCTACGCTGACCTGGAGGCCGTCAACCGCGCCCGCCGCCCCCTCGCCAAGCCCATCAAGCCCACAGATATCCTGCCCCCTGAGCGGGGACACGAGGTGGCCAAGGAGCTGGGCGTGCCGTACTACGAGACCAGTGTGGTGGCTCAGTTCGGCGTGAAGGATGTCTTTGACAACGCCATCCGAGCTGCCCTCATCTCCCGCCGCCACCTGCAGTTCTGGAAGTCCCACCTGAAGAAGGTGCAGCGGCCGCTCCTGCAGGCACCCTTCCTGCCCCCCCGCCCGCCACGGCCCGTAGTGGGCATCCCCGACCCTCCTCCCAGCGACGGTGAGGGCCCCGCCTCCCTCTTTGCACTGCCCCTCTGTGCAGATGTGCTCTTCCTCCTGCAGGGTGGCACCACCCGCGTCTTCGCCCACAAGGTCTACTTGGCCACCTCCTGCTCCAAGTTCTATGACCTCTTCACATTGGACCTCGGGGGAGCATGCGGGGGCTGGggtgaggagagggagggcgAGTGgagcagggaggaggaggatggatCCGGATctgggggagaggaggaagagcagaATCGCAGAGGGGCCAAAGAACAGGCCGGACGCACCAAGAGCCTGGATATCGATAAGGACGGGGACGGCAGCGGGGGTGCGCGGGGAGCCAGACGGCCCCTCCTGCTCCAGCAGGGCTCTCTGAGGACCTCACAGAGTGACAACTCTCTTCCTGCGCGGAGCCAGTGTGTGGGGGGACTGCTGGGGGGAGGCCGAGCCCTCTCCAGCTGGGGGCGCGGGTTCCAGAGCGTCTGTTTAGAGCACATCGAGGACCCTGTAACGGGGCGGCCCAGGCTTATGACTGTTGTGTCCATGGATGGCTTGATTCAAAAAGGACCCTTCCAGGCGGTCATGCAGTACCTGTACACGGGCAGCTTAGACGAGGCACGGGGAGACCTGATGCAGGTGGCCACCATCGCGGAGCTGCTCGAGGTGTTCGACCTGCGCATGATGGTGGCCAATGTGCTGAACCGCGAGAGCTTCATGAACCAGGAGATCACCAAGGCCTTCCATGTGCGCCGTGCCAACCGCATCAAGGAGTGCCTGAGCAAGGGCACCTTCGCTGATGTGGTGTTCCGACTGGACGACGGCTACCTCCCCGCCCACAAGCCCCTGCTGATCTCCAGCTGTGATTGGATGGCGGCCATGTTCCGCGGGTCCTTCATGGAGAGTTACATTGAAGAGGTGGGTGAGGCAAGGCTGTGGGATGGCCATAATGAATTTGACATTCTGCTAATTGGCACCAAGAACTTGGGCAAGTGCAATGTGACGAGGAAGCGTGAAGGGATTTGGATACAGTTTGATATTAATTATTTCCGCGAGAGGGACTCGGCGTCCTCGGCCACATCAGCAGGGCTCCGAGGGTGCCATGGGAGGCGGTGCGGCCAGCTTCGGTGTGTAGTGTTCTGTGGGAATCGGGGCTTTGAGGTCTCCATCCCTAACACCAGTAGTGCCTGCATGCGAGCCGTCCTGGAGTACCTGTACTGCGGCCTGCTGACGGCCACCTTCGCCTTGCAGCCCATTGACCTCATCGTGCTTGCCAATCGGCTGTGCCTGCCACGCCTTGTCGCCCTCACAGAGCAGCACGCAGTGGACGCACTGCTCCAGGCCGCAGTGCGGGGCACTGACATTGATGGACAGGTGCTCATGTACCTGGAGATGGCTCAGTTCCATAATGCCAAGCAGCTGGCCGCCTGGTGTCTGCACCACATCTGTACAAACTACAACAGCGTGTGTCGCAAGTTTCCCAAGGAAATGAAGGCCATGTCTCCAGaGAACCAGCGTCACTTTGAGAAGCAGCGCTGGCCGCCAGTGTGGTTCCTGAAGGAGGAGGACCGCTACCTGCGCTCGCAGAAGGagcgggagagggaggaggagatcCTGCGCAAACAGCACACCAAGAGGGGCTGGTGTTTCTGGAgacactcctcctcctccccccacgTCTCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95334 lncRNA upstream 254887 5462523 ~ 5462811 (+) True G76346
TU95253 lncRNA upstream 469517 5243727 ~ 5248181 (+) False AMCG00009897
TU95233 lncRNA upstream 488912 5158388 ~ 5228786 (+) True G76266
TU95199 lncRNA upstream 796852 4911270 ~ 4920846 (+) False AMCG00009898
TU95119 lncRNA upstream 1464144 4253237 ~ 4253554 (+) True G76186
TU95410 lncRNA downstream 115 5744257 ~ 5751212 (+) True G76408
TU95417 lncRNA downstream 23735 5767877 ~ 5769052 (+) False AMCG00009915
TU95419 lncRNA downstream 26113 5770255 ~ 5771092 (+) True G76417
TU95420 lncRNA downstream 27532 5771674 ~ 5771949 (+) True G76418
TU95439 lncRNA downstream 31814 5775956 ~ 5776174 (+) True G76434
AMCG00009914 mRNA upstream 114715 5595438 ~ 5602983 (+) True AMCG00009914
AMCG00009911 mRNA upstream 123691 5562975 ~ 5594007 (+) True AMCG00009911
AMCG00009909 mRNA upstream 192136 5509084 ~ 5525562 (+) True AMCG00009909
AMCG00009905 mRNA upstream 257814 5458286 ~ 5459884 (+) True AMCG00009905
AMCG00009906 mRNA upstream 269379 5438467 ~ 5448319 (+) True AMCG00009906
AMCG00009915 mRNA downstream 22195 5766337 ~ 5768059 (+) True AMCG00009915
AMCG00009919 mRNA downstream 42283 5786425 ~ 5794926 (+) True AMCG00009919
AMCG00009923 mRNA downstream 146138 5890280 ~ 5894977 (+) True AMCG00009923
AMCG00009922 mRNA downstream 188879 5933021 ~ 5940090 (+) True AMCG00009922
AMCG00009926 mRNA downstream 242125 5986267 ~ 5998592 (+) True AMCG00009926
TU94664 other upstream 4353864 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4382648 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4390134 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 4680256 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 4845963 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5405484 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5956564 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9896819 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 10313389 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11479740 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059360 False 2190 mRNA 0.54 11 NC_007116.7 43458304 ~ 43502553 (+)
grasscarp (Ctenopharyngodon idella) CI01000039_03850075_03871274.mRNA True 2467 mRNA 0.55 11 CI01000039 3849970 ~ 3871274 (-)