RNA id: AMCG00009919


Basic Information

Item Value
RNA id AMCG00009919
length 2626
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00009919
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5786425 ~ 5794926 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAGTAAAGCTGCTGGCCCAGTAACAGAGCTATTCAGTCGCTGCAGCTTTGACACCACGTATAGCAGCCAGAACACCAGCAAAGCTCGCGTCCGTACAGCGCAGATATACGCAGTTCTgggcggctccaccaatgggagcggtggaattctgcaaatctgcgcagatctgcggacatctgcgctacaagaacgcgacctcTGTTCTTTGCCACCCCTTCAAGATCCCCCAATTATTGTGCTAAGAGCCCTCCTCCGCGGCGGCAGCTGCACAATAAAGTACATTGTTGGGTAAGCAGTTTACCGTAATAGGCGCATAAAGggtgtgcagtttgtttttcaaagctgtCCTCCGAACTCCTCCACACAGACCGCATTTCAGCCATCTCTCTCCCGGGACATTAGCATTCTCCGCACCCCCAGTGTGAGGAGCCCAGTCTCAGCACCACCGACCCGCAGAGTCTGCGTCCAGATTGCCGTGGACGGCTGTACATGCGAGTGAGGAAACTGGGGGGatgcaatgtgtttgtttttcaccgAAACGCAATTATGAATCATTAACAGTTACCCAGGACAGATACTGTTGTATTGCagaataatgcaaatatatacgtgtatgaaaatgtaaaagacaTTTACTTTGTTCCTTTTGCAAAGTTAGAGCTCGGTGCTATTGAATTGGACTGAGCTGGACAGTATTAGTCCTGGCTTGTTTCTCCTCCTCATTGCACTTCAGACCCCCAGTTGCCACGGGAGACGGCAGGTCGCAGTCATGGGCAGAGAGGCGCAGCTGGTCGGGGTTTTTATTCTGCACATTCTCGCCTTTCAAGCTGGGCAAGTGCGTGCAGCTGTGGGAGGTGAAGGGGAAGGGCAGGGTGACTCTGGAGGAGTGCCGGCCTGGATTGGGAATCCAGGAGTGGCTGTGGCACCCTGACACCCAGGCACTGACCAGCCTGAGGACAGGGGAGTGCCTGAGCGCCCCGCGGACCCAGGAGCATGAGCCTGTGCGGCTGCAGAGCTGCGTGgcaggaggaggcagaggggcATTGGAGGGGCAGGCCTGGGGCTGCTCCAAGAAGGGCCACCTGACCCTGCAGGGGAAGGGGCTGCACCTCAGCGCTCGTCTCGGCTCCACCAAGGTGTTCCTGTCCAGGGACCGTGGTCGGGCCAGCAAGTGGAGGACCCTGGCCAATCATACCGTCTGCGCCCAGGCGATGCGGTCCCCCTCCTGGCATCACTATGAGAACACGGCTGccaccacacagcacacagcgaCACCCACCGCCAGCCTCCACTTCACCAGCCCTCCGGCCAGCACCAGACGCCAGCTGAGACTTACAGGTGCTGCCCTCATGGTGGACGGCCCAGGGTCTCCAAGCCCCTCCGACAGGGAGCCCAGGACTGAGCTGCCCCCACCATCTGACACCAGCACCCCCCCTACAGGACCCTCCACCACCTTCTTCAGCCTGGACTACGGGATGACCTGGAAGGTGGCCATGCTGGTCCTGAGTGCCCTGGCTCTGCTGCTGGGCCTGACCATCCTCATGCTCAACATTCACTTCAACAGGAAGAAGAAGCTGGTGTGTGTGCTGAAGTCCTACAGCCAGACGGAGAGGGCCGGCCAACCTGGGCGGGCAGCAGTGGACGAGAGGGCTCCCCTGACCCAGCGCCCCCCCCTGCCCTACCGCTCACCATCCCTGCAGCGCGGAGAGATCCTCATCGAGTGGAAGGACGGCACCGTCACCCCGCTCTTCGACAACAGCAGCTACCTGACAGACTGACGGGCCCAGGGAGACGCGGCCAAGACATGGCACGTGTGTGCCGTATGACTGCAGTATGTGTGCCCATGTGTGTTGCGTGGCTGCAGTATGTGAGCTGTGCCCGTCGTTGTTTGTGTGGCTGTGCGAGACTGTATTAGTGAATTTCCTGCTGTATTGCAAGACCAGGCACGATCTCGTTGAGCTGTCGAAGGCAAGACTAACTCCTGAAACAGACAAATCTGTAGTTCTCTCTCATGCAGAAAAGATAATGGCTTTATTAACAAATACTTGATTTACGATTTTCCTAAAGATTAGTGTTTATGCTCATTTTTTCGGATGACATTAAAGATGGCACGAGTAAAGGAAAAGGCTTTATTGAcaaagattttaattatttatgactTTCACATGCACGTAACCCTTTATAGCTAAACAGgtgttgttgtttcttcaggacattaaaagctttatttaGATATTAATGTGACCGGAAATTCTTTACAACTCTGTGTTCATTAAggctctgttttattttacagtaattctGATATAATGAAATGCACGTTAACTGTCCACATGttagcaaatacaaaaaatctgtttcttAAAGCCTGTTGAAAATTGTTActtgtttttaactttatcGAAGTGTAACCTGGTAAAGTGTTTAGAGACTGTATTGGTATTCCACCTCTTACTGCTTACTCTTCTATGTGTCCTGTGCTGTCCTCGATCACATGTTCTGTCCCTGTAGTACATACTAAGGAATTTTTACCAGATTATGAGataatgaataatttatagAGATCTGTAGATGTCACCAGTCTAACCTGCAGTTTCAATAAAGGAGCATCAGTACTGTACAga

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95439 lncRNA upstream 10251 5775956 ~ 5776174 (+) True G76434
TU95420 lncRNA upstream 14476 5771674 ~ 5771949 (+) True G76418
TU95419 lncRNA upstream 15333 5770255 ~ 5771092 (+) True G76417
TU95417 lncRNA upstream 17373 5767877 ~ 5769052 (+) False AMCG00009915
TU95410 lncRNA upstream 35213 5744257 ~ 5751212 (+) True G76408
TU95468 lncRNA downstream 102384 5897310 ~ 5900982 (+) True G76460
TU95493 lncRNA downstream 150780 5945706 ~ 5946053 (+) True G76484
TU95496 lncRNA downstream 152952 5947878 ~ 5950820 (+) True G76486
TU95533 lncRNA downstream 288925 6083851 ~ 6085782 (+) False AMCG00009929
TU95571 lncRNA downstream 366530 6161456 ~ 6166615 (+) False G76550
AMCG00009915 mRNA upstream 18366 5766337 ~ 5768059 (+) True AMCG00009915
AMCG00009916 mRNA upstream 42283 5717698 ~ 5744142 (+) True AMCG00009916
AMCG00009914 mRNA upstream 183442 5595438 ~ 5602983 (+) True AMCG00009914
AMCG00009911 mRNA upstream 192418 5562975 ~ 5594007 (+) True AMCG00009911
AMCG00009909 mRNA upstream 260863 5509084 ~ 5525562 (+) True AMCG00009909
AMCG00009923 mRNA downstream 95354 5890280 ~ 5894977 (+) True AMCG00009923
AMCG00009922 mRNA downstream 138095 5933021 ~ 5940090 (+) True AMCG00009922
AMCG00009926 mRNA downstream 191341 5986267 ~ 5998592 (+) True AMCG00009926
AMCG00009929 mRNA downstream 264316 6059242 ~ 6085806 (+) True AMCG00009929
AMCG00009930 mRNA downstream 317370 6112296 ~ 6149391 (+) True AMCG00009930
TU94664 other upstream 4422591 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4451375 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4458861 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 4748983 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 4914690 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5354700 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5905780 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9846035 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 10262605 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11428956 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile