RNA id: AMCG00009922


Basic Information

Item Value
RNA id AMCG00009922
length 1823
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00009922
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5933021 ~ 5940090 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGACGCAAATTCTGCGCGTCAACAACGTACCCAATTGGTAGCTTTTATAAGTGCTCTTTCGGCGTGTTGTTCTAGTGCTCATCTCGTTTTAAACGTGCGCTCATTAATGGCAAATGGATATAAAGAGGTGCTGTTCTCTCGGGGAGGCGGGGAAagtGATAATTCGGATATTTGGGATGACACCGCATTAATAAAGGCGTATGATAAGGCTGTGGCTTCCTTTAAGtggaAAGTTGGAGACCCCTGCAATGCAGTTTGGTCAGAAGATGGCAAATCATATCTTGCCACTATTACGTCCATAGACCACAAGAAAGGAACCTGCATTGTTGTGTACCGTGGGTATGGGAATGAGGAGGAGCAGAATCTATTGGACCTGTCTGAGAATTCGGACGAAGAAATTGGGATGGCACCTGCAGCACCGCTGATCCCCCCGCCTCCTCCAATGGGTCCAGACTTGGGAGACGGCGATGAGGCTTTGGGGTCCATGCTGATCGCTTGGTACATGAGTGGCTACCACACCGGCTATTATCTGTGCTGCCTCAGGGATGAGCCGATTCTGTCTCCTTCGTGCACCAGCATCCACAACAGCAGCAAAGCGGACTTCAGGCATCAACTGTGTGGCATCCTTAGCACATGAGCATGACCACCATCTGGACTGAGCTGAATGGGGTACTTTCTCTGGCATTTTCAGGAAGGCACTTTCTGTTGGTCTTTTATCAACAAACCCATGATACCTTACATGGTCTTAGCAGCGATCTGATGGCCCAGCATGCATCTCTTCCTTtccagtgttatttttttctactgtGCTTGAAGTCCCCGACCAGTATCTGTTCACCGCCACCACAGCTGGTTGGTCCTTCTTTCAGCAGCTTCTTTACTCCTGAGCATTTCATCTGATGTCCCTGAGAAACTAGATTGTGAAGTGTGCTACAATTCCTTGACAACTTACTGGTTAAATGCGGACTGTTTGTTCTGGCTGATCCACTTGAGCAGCTAGTTGACCTTGTCCAATGGCACACAACTCTACCAGGTGAACAAGGTGCGCTGATATGGACTATACCACAGTATCCATTCAAAGTGTGAATCTTGGGTGGAAAACTAAACAATTATCCAACGTCTGACAGCATTTTTAGTCTCTAggaatttaaaactttttcGGGATGGGAAAGTTGTCCttcatttttaatgcattgctGGAAATGGTGGTAACTTAATGCTCCTGCTACCTTGTTTTACCCTGTTAAGGCCAAACATCTCGGCACCTGGTCATGACGCCATGTAAACCATCCTTGACTAAAACCCGAGTAAGGACCCTTAGTCTCAATCGACCAATCCAGTGTGGGACTCTCAACCATCTCCTAACCCAGTGTGCTTGTGGTCTCTGATGTGGTGCTGGCAATTGTGTGAAAAGCAAGATCTTAGAGAGAGGAATCTCAATGGTCGGTAGTGTGAATCAGAGAATACAATTActtattgatttcttatttatcaatttaatttagttttatcagtcattttactttttgtgtgcataatgtgaaaataaaatgtttcccaTTTATCAAATTTTGCATTATCAATCTTTTATGGTTTCTATAAATATAGCTTCTTGCTTCTCGACTGTTGTTAAGGAAATCTTGTACCCTctgtgacaaaaaaataaagtccaaAATCAAAACCCTTCCAGCTCCTCCAAATATGAAGTAAAGCTCctacaaataagtaaatcattCTCAATCCcctttaaaaagtaatgaatgtGCCTTTGTCTTAAATGTAATctgcataatgcaatttacagaaattaaagttcccttg

Function

GO:

id name namespace
GO:0009987 cellular process biological_process

KEGG:

id description
K13129 SMN; survival motor neuron protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95468 lncRNA upstream 32039 5897310 ~ 5900982 (+) True G76460
TU95439 lncRNA upstream 156847 5775956 ~ 5776174 (+) True G76434
TU95420 lncRNA upstream 161072 5771674 ~ 5771949 (+) True G76418
TU95419 lncRNA upstream 161929 5770255 ~ 5771092 (+) True G76417
TU95417 lncRNA upstream 163969 5767877 ~ 5769052 (+) False AMCG00009915
TU95493 lncRNA downstream 5616 5945706 ~ 5946053 (+) True G76484
TU95496 lncRNA downstream 7788 5947878 ~ 5950820 (+) True G76486
TU95533 lncRNA downstream 143761 6083851 ~ 6085782 (+) False AMCG00009929
TU95571 lncRNA downstream 221366 6161456 ~ 6166615 (+) False G76550
TU95570 lncRNA downstream 225232 6165322 ~ 6166615 (+) True G76550
AMCG00009923 mRNA upstream 38044 5890280 ~ 5894977 (+) True AMCG00009923
AMCG00009919 mRNA upstream 138095 5786425 ~ 5794926 (+) True AMCG00009919
AMCG00009915 mRNA upstream 164962 5766337 ~ 5768059 (+) True AMCG00009915
AMCG00009916 mRNA upstream 188879 5717698 ~ 5744142 (+) True AMCG00009916
AMCG00009914 mRNA upstream 330038 5595438 ~ 5602983 (+) True AMCG00009914
AMCG00009926 mRNA downstream 46177 5986267 ~ 5998592 (+) True AMCG00009926
AMCG00009929 mRNA downstream 119152 6059242 ~ 6085806 (+) True AMCG00009929
AMCG00009930 mRNA downstream 172206 6112296 ~ 6149391 (+) True AMCG00009930
AMCG00009928 mRNA downstream 209928 6150018 ~ 6154858 (+) True AMCG00009928
AMCG00009936 mRNA downstream 240313 6180403 ~ 6185389 (+) True AMCG00009936
TU94664 other upstream 4569187 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4597971 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4605457 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 4895579 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 5061286 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5209536 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5760616 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9700871 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 10117441 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11283792 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile