RNA id: AMCG00009926


Basic Information

Item Value
RNA id AMCG00009926
length 1527
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00009926
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 5986267 ~ 5998592 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGAAAGTGATCACtctaaaggagaaaataaagacaCTTCCTCAACTAAAAAAGGAGAACTTCAATCCAAAAACATGGATGAAATCAGAAACTGTAAAAGGTTTTAAAGACTTTATAATGCGCAAGGAGTTTGACACAGAGATGGACACCAGTTTTGACAATcATCACCGCACAGCCCTCCATTATGCTGTTTCTGCAAACAATAATGAGGCAGTGGAGCTTCTGCTGAAACGCAGAGCAAAGCTGGATCTGGCTGACAAGTATGGAATAACAGCTCTTCATCTGGCTGCATGGTTTGGGTGTCTGGACATCCTGAAGTTACTGGTCCATGGGGGAGCAGACCAGAAGATTGAGACTCAGCAAGGACTGAATATAATGCACTGTGCTGCTATCAACAACCACACTGGCattgtgaaatacattgttgATGACCTGCAGATGAAAGAGCTGGATAAGGAGGACCAGGCAGGAAAGAGGCCATTTCACCTGGCAGCTGAGAACGGCTGTATGGAGATGCTAGAGATGTTGATGGATGAGTCTTATCAAATGTCAACAATGGAGGGAGACCAGgaCAGTAACACACCATTGCATCTTGCGGCTAAAAATGGCTATCTAAATGTGATTGAGCTGCTGATGCAGACCATTGAAAACCAAAATCAAGTGGGAGAGACTGCCCTGTACTTGGCTGCAAATGGAGCGCATGAAGAGTGTGTGGAGGCATTGCTTGAAGCAGGCTGTGATGCCAACATTGTGACGGAACAAAGACTGTCACCCATCCACCTGGCTGTTATGAACAGTCATCTCCCTGTAATCTACACACTGATCAAGGCTGGCTGCGATGTTAATGTGACAGATGATAGGAAGCAAAGTACTCTTCACATTGCTGTAGAACTGGGCAATGCAGACATAGTGGAGCTGATACTGAAAGCAGATGCTGACCTTACAATCCAGGACAAGcAAAGTAAGACAGTTTTGGACGTTGCAGTGAGAGGGAACACAGTTATTATTGTGGACATGATCATTAAAGCAGAGAGATACTTTGAATGGAAGAAGGGGAATGCAGAATCTAATGAAACCCTTCACAGTGAATTTCCACTGACATTCAAATTAGACCACAAACCAGAGACCAAGCCAATCCGCACTACTATCTGGAATCTTGCCTACAATCTATTAAAGCCCAATGACTGGAAGAATCTGGCAAGGGTTTGGCACTTCACGGAGCACCAGATCAGAGCAATTGAAGAGCAGTGGGCAGGCCTCAAAAGTTACCAGGAACACGGACACCGGATGATATTGATATGGTTGCATGGAGCCCTGATAACAAACAGCTGTCCTGGCAAAGAGTTGTATGAAGGTCTGCTTTCTATTGGAAATAAAAGCGCAGCAGAGTGCTCTTGGATTTACTCTACAACCTTTATGGAGGACATGCCAGATAAGGTGTGCGGAGCTCTTCCCCTGCCCCTCCCTGCTGTGGAGGCGGACGAGTGCTGTGCTGACCTGGGAAACTTTGCAGCTGTGGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95496 lncRNA upstream 35447 5947878 ~ 5950820 (+) True G76486
TU95493 lncRNA upstream 40214 5945706 ~ 5946053 (+) True G76484
TU95468 lncRNA upstream 85285 5897310 ~ 5900982 (+) True G76460
TU95439 lncRNA upstream 210093 5775956 ~ 5776174 (+) True G76434
TU95420 lncRNA upstream 214318 5771674 ~ 5771949 (+) True G76418
TU95533 lncRNA downstream 85259 6083851 ~ 6085782 (+) False AMCG00009929
TU95571 lncRNA downstream 162864 6161456 ~ 6166615 (+) False G76550
TU95570 lncRNA downstream 166730 6165322 ~ 6166615 (+) True G76550
TU95577 lncRNA downstream 169019 6167611 ~ 6168308 (+) True G76555
TU95708 lncRNA downstream 743340 6741932 ~ 6742239 (+) True G76658
AMCG00009922 mRNA upstream 46177 5933021 ~ 5940090 (+) True AMCG00009922
AMCG00009923 mRNA upstream 91290 5890280 ~ 5894977 (+) True AMCG00009923
AMCG00009919 mRNA upstream 191341 5786425 ~ 5794926 (+) True AMCG00009919
AMCG00009915 mRNA upstream 218208 5766337 ~ 5768059 (+) True AMCG00009915
AMCG00009916 mRNA upstream 242125 5717698 ~ 5744142 (+) True AMCG00009916
AMCG00009929 mRNA downstream 60650 6059242 ~ 6085806 (+) True AMCG00009929
AMCG00009930 mRNA downstream 113704 6112296 ~ 6149391 (+) True AMCG00009930
AMCG00009928 mRNA downstream 151426 6150018 ~ 6154858 (+) True AMCG00009928
AMCG00009936 mRNA downstream 181811 6180403 ~ 6185389 (+) True AMCG00009936
AMCG00009934 mRNA downstream 226944 6225536 ~ 6241567 (+) True AMCG00009934
TU94664 other upstream 4622433 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4651217 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4658703 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 4948825 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 5114532 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5151034 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5702114 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9642369 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 10058939 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11225290 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile