RNA id: AMCG00009928


Basic Information

Item Value
RNA id AMCG00009928
length 3709
RNA type mRNA
GC content 0.42
exon number 2
gene id AMCG00009928
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6150018 ~ 6154858 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGGAATACCTGGCATTGCCCCACTGCCAGTAGGGTTCAGTGAGAACATCTCACCGGCACACCAGTAAAAAGGTATTGCAGAGGAATAGAATGATTCACAAAAGGTGGTGTAATGGCATCAAGATCCCTCACTTGTCACCGCAATCCAAAATCAATACCTTCTAGATAATCTAACATATTGACAGCAGCTGTCTATGGAGGAGGGGGTGGGCGCTCCTCAGTGCTGCAAGTAGAAAACCATTTCCTATAAGTACTGGACTGTGATAAAGCGCTCCCGCCCGGCAGCTGAGCTCAGCGGATAGGAATGCGCCTGACAGCTCCAGAGCGCCGGACTGCAGCGCACAGGGCAGGGCTGCATTGCGCTCTTGGGTCGGCTCTCCAGTGTGTTTTGGCTTTTTGTCTTTATCGTCGTTCAGTAAAGCTGGTGTCCTTTCATACATCGCTTAAGCCGCACCAGCAAGAAAGTTCACTCACAGCGCGTTAAACATGGCGATGAGAGAACTGATCATCCTGTCGTGGATTGCATTCACGGCCACGGCTCAACACGGAAACCAGAGCGGACCAAGAGGTTTCCCATTATTCAGTGTAACAGGAACCGATGAACCCATTGAATACTTAGATGTGTCCAGTAGTAGAGAAGGAAGTGGATCTGGATTCGGGTTGGAGCCAGTGAAGGATAAAAAAATCCCAGCTGTCCGCAAACAATATATAACGCCAGAGGCCAGTCAGTTTCTCACTGGATCCTTGATGACCGCATTCATCCCCACAGTTTACACTCTGGTTTTTCTCCTCAGCCTTCCTCTAAATGGCATCGCAATCGTCATGTTCGCGATTAAAATACATCCTAAGAAGCCAGCCGTGATATACATGCTGAATCTGGCCGTTTCGGACTTGCTGTTCGTTCTCTTACTTCCCTTCAAGATCTCCTACCACTTCAATGGCAACAACTGGGTATATGGGTCTGGGATGTGCAGAATAGTCACGTCTGCTTTCTACTGCAACATGTACTGCTCTGTTCTGCTCATGATGTGCATCAGTGTGGACCGTTTCATGGCGGTTGTTTACCCCATGGCCTCCCTCGCCTGGCGCAGTCAGCAGAATGCACTGGCTGTTTGTTCGGCCATGTGGCTGCTGGCCATTGGCGGGGTCATGCCCATTCTCCTGTCTGAGCAGACCGTCCATTTACCAGACCTGGGGATTACCACCTGCCATGACGTCTTGGAAATCGAAAAGTTCACAGGCTACTACCTTTACTTCTTCCCCATTTTCTGCtccattttcttcttcatcCCCCTCATTTTTACATCTGTGTGTTACATCCGTATTATTCAGTGTCTCAGCTCTGCCAACGTGGCAAACAGGTCCAAGAAGACCAGAGCTATTATCATGGCCATTACCGTCTTCATTGTCTTTGTCGTTTGCTTCACGCCGACCAATATCATTTTGCTCACTCACTATGTCCAGTTTGCAGGAGGACACAATGACAGCTCTTACGTCGCCTATCTGCTCTCTATGTGTATTGGCAGTGTGAGCTGCTGCCTTGACCCCTTGCTTTACTACTTTGGATCCTCACAGTGCCAGAAGCAGGTGTGCAACCTCCTGCAGTGTAAAAGTAGCCCGGAGCTGTCAAGCACCACACAGTCTGAAACCAGGAGCAGTAAAATCGAGAGCTTTCCAACAAGCCTTGGCAGTCAGTATAAGAAGCTGATGGCTTGATTTACTACAATATTACTCTACCTTGGGTGCTTTATAACAGCATTGCCCACCAATTTCTCAGCACATTTATAGAactgaaatgtgtgcatttagATGAAAAGCCATATTGGTATTGAAAGCATGCCTTTCCAAACCATTGTAAGATTAAAAGTCAAAGTTTAAACATATCCTCCTATCAGGAAGCTTGTTCTCTGTATTAGGCTTGTCATTTCCTCACACATATGATGCATAagtgcatataaatataatatatgctTTTTGTCTCTAAGCTATTCAAAGTTGTACTTGTAACAGTGTTAAGCTGATGGCATCAGtgttattgtttatgttttttcatctcttctGGAACAGGTTTAGCTAAAGAAAGGAGGTTATCTTCAGCTTTGCAATGCATATTCACTTGCCAGAGTTAGTGATATGCATGCAAAGCCACTGGGGAAACTCCCATTATACTAAACATCCTGTTAACATATTTTCCTGTACGTTCCATGTTGGtgtttgttaattgataatcaTGCATGTTTGCACATATGTCTTGCTTTACTTCACATACAAACAGGCTGGCCTGCTTTGGAGCTTTTGGTTAATGTTTTAGGAAAGCAAGTCAAACTATACTGAATGCTAAAGTCAGCCTTAGTTTGTATTCAAATGCTTAattcattttatacaattacagatATTGTACTTCAATTTTACCAAAATATATTGTGGCCATGTCTAGTAAAACATTGTCTATTCGATGAGCATATGATGTGCTATATAGTTGAGGAAAAACATCTGCAGATTCCTCTGAAGTATTTGATTATTGCAACATTTGTTCTTATTTcaagacacacaaaaatgtatattctttatCTCCTCTTTAACATATAGATTGAATTGTAATATTATCAGCTACAATAATGATAATTCCATTATTTGAAAAGggcaaatgaacattttgttaaatgtttaaaagtaaacattttccatGATTACACAGTTTATAGAGAGAGAAGGATCAGTTTAATCTTACTAGTAActttatgtgtgtttttcattgtaaacaTGGGTGTTTAATCTACTTGTTCTTCATTTAAATTCTTGTAACATGTAATCTGCATAAATTAATAACCAAAGGTTATTGACAAATTGCAGTGTCTTTCGTTTCTTTAAGTTGTatgttgtgtattattttataattagggCATTACATATAAGATGGactcttaataaaaaaaattaaaaagttactGTGGTGTTCAGGGGCACTGGAAATCTCTTTCAATCCTGCTTATAAAACCGAATAatcatgttatttgttttttaagcatgTATCCTTTTTTTGCTGAACATGTTTGTCAAGCCACACTGTTGGATCTGAGTTGTTCTGAGGTCCTGTGCTGTGTACAGATTGGCTGTTGTGAAAGCCCCTGTGACCTTCTGTTCATATGATGACATTCGGCACAGCCAGCATTGATTAAGTTTTATGGTGAGTGTACGTACATCAAACAACACAATGTTGTTGTGTCACATGGGTGGAACTGTGGTTCAGAGAGAacagcactgaaaacatttaCTTCCTGCTTAGCGTCCATATCTTGATCCCATGGAAAAcctctgaaatgtatttgaacacTGAACCTGGAACATACCAAAGAGGTTTGCATATCTAGTAACTGCACTGTGGGAGGCATGGATTAAGGGTCTGGTGCTGCTTTCATAGTGTCATGTCAGAAATACAAGGGATTGTCATAATGAATCATATCAGGGTTGGAGCCATAAGTGGCACCTCTGCTCATAGAGTCACACATTTCCTGTCAAATTAGTCTCATTGGGGACCATTGCGTGTTTTACCTTTCAAATATAAACCCAGGCTTTTGAGCAAGGAATGTGTCAAGGCACACATTGTTAGTCATAATTGTAAATCAATAACAGCGGAAGACTGCCTAATATGACAATGTTTTATGCTGCAATACTGATTACAACATAATACCTACTGCTCACTTCAG

Function

GO:

id name namespace
GO:0070493 thrombin-activated receptor signaling pathway biological_process
GO:1902037 negative regulation of hematopoietic stem cell differentiation biological_process
GO:0098508 endothelial to hematopoietic transition biological_process
GO:0016020 membrane cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0015057 thrombin-activated receptor activity molecular_function

KEGG:

id description
K03914 F2R, PAR1; coagulation factor II (thrombin) receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95533 lncRNA upstream 64236 6083851 ~ 6085782 (+) False AMCG00009929
TU95496 lncRNA upstream 199198 5947878 ~ 5950820 (+) True G76486
TU95493 lncRNA upstream 203965 5945706 ~ 5946053 (+) True G76484
TU95468 lncRNA upstream 249036 5897310 ~ 5900982 (+) True G76460
TU95439 lncRNA upstream 373844 5775956 ~ 5776174 (+) True G76434
TU95571 lncRNA downstream 6598 6161456 ~ 6166615 (+) False G76550
TU95570 lncRNA downstream 10464 6165322 ~ 6166615 (+) True G76550
TU95577 lncRNA downstream 12753 6167611 ~ 6168308 (+) True G76555
TU95708 lncRNA downstream 587074 6741932 ~ 6742239 (+) True G76658
TU95709 lncRNA downstream 599663 6754521 ~ 6754936 (+) True G76659
AMCG00009930 mRNA upstream 627 6112296 ~ 6149391 (+) True AMCG00009930
AMCG00009929 mRNA upstream 64212 6059242 ~ 6085806 (+) True AMCG00009929
AMCG00009926 mRNA upstream 151426 5986267 ~ 5998592 (+) True AMCG00009926
AMCG00009922 mRNA upstream 209928 5933021 ~ 5940090 (+) True AMCG00009922
AMCG00009923 mRNA upstream 255041 5890280 ~ 5894977 (+) True AMCG00009923
AMCG00009936 mRNA downstream 25545 6180403 ~ 6185389 (+) True AMCG00009936
AMCG00009934 mRNA downstream 70678 6225536 ~ 6241567 (+) True AMCG00009934
AMCG00009935 mRNA downstream 95042 6249900 ~ 6284991 (+) True AMCG00009935
AMCG00009940 mRNA downstream 375206 6530064 ~ 6538910 (+) True AMCG00009940
AMCG00009945 mRNA downstream 510832 6665690 ~ 6670486 (+) True AMCG00009945
TU94664 other upstream 4786184 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4814968 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4822454 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 5112576 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 5278283 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 4994768 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5545848 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9486103 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 9902673 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11069024 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile