RNA id: TU95533


Basic Information

Item Value
RNA id TU95533
length 1932
lncRNA type sense_over
GC content 0.37
exon number 1
gene id AMCG00009929
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6059242 ~ 6085806 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGACTCTATTTGGTCACCATGTCCTGATAATTTGTTATAGCCAGTTGAGGTGACTGGTGGTTTGCAGACACCTGCTGGCCCCTGTTGCCcattcagtgtttgtgtttctatttaCCAGTTGATCATGGCATGGTGGCCCTGTTCCTGGTTTATTTTGATTGGAAGTGTGTGGGTGCCTGTTGGCTCCCTGCTGCCCCTTTACATTATTGTTTGATAAGCTTTAGTCGAGACCTCATCTCTATGCAGACTGTTGTCCCAGAGTCGGTTTCCCTAAGCTTTGCTGCTGACCTCCCTTATGACAGTTTGGGTATAAGgtatcccatccccctttgggtaggtTTCTCAGTTTGAAAGATAAAGATAGCTTGTGAATGCAAacccggttatctgagaaagagaattCTACCCAAAGGCTGCAAAGGTTGCACCTGAGTATTTTGGGCTCCAGCTGAAAAGAGGCTGATTTCGTTGTGCACtgtagttaaagcaggcagggGGGGTCCGCTGCACTGGGCCTATAGGCAACTTTGAGTTCCCCATGAGTGatgtcccatccccctttgggtagtattctatTTTGCTGATAtctggggttgcattcacaagaTATCattttactgacaaatatatttaataatatgaatttcattcttaaaacaaaatatctgtgCATCATATGAAGCTTTTGGAGCAAATAAACTGCACATTGATGGTACAATAGTGAATATATTCTAGTGTTTTGACAGAAGTGAAGAATAACTGACAAATGTAAACCCTTTTCTCCCAATTTCTGTCAATGTGACTTAATGtgttatgttaaaaaacaaaaaacaaacattttaggaCTCTGTTACTAATACTTTCTGTGTAACATATTTACCTATCTGTAAAACTCATCTGTAGTGTCTGCTCTTTCTGTTAGTGTAGCTCTTGTAAGATGGACTCTGCAGCTCGCACACTTCATCTTCTTGTGTGTGCTTAAGCTTGCTTGTGAAAGCCCCATTGCCAGGATTactacatgtataaataatacacattttgaacatattatatattttattgaagatTGGTTGTTTAATACTATATTATACAATTCTAAGACAAATATACCGATTAGAGCAGGTACTATTGACAAAAAGCCATTTTAAGAAGGTCTGCATTAAACCAATGTTATAGTGCAGCTATGACCTCTGTAGTGCTATCAagttcttaaaatgtatattgtctcTTGAACCACAAAGATTGCAGCAGTGCTATGATCTTGGTTTGTTACAAGACCTAAATCTTAATCAAGTATACAAAGTTTAACTCtcatttcagatgttttctgCAAAGAATGTTtcttatttctgtaaatattgtatataattttgaGTTTCATTTCTGAGGGTCATTTGCTaatgtattagttttatttactgAAGTGTTATCATGGTTTGTTTGTGCACCTTAAGTCTTGGCAATGGCCCATCCGTTCTCAAACTGCTATATATCCCAGAAGTGCAAGGCTCTCAGCTGTTGTGTGCTTGCATGTGTGTGCTGatttactttgtgtgtgtttgattttgtgtttttgtattcagaGAAAGTATTCATTTCTAAACATGTGAATGTATCATTCTTGTAAGCTTCTTGGTGTCAGATTTGTGggtgggtttttctttttttctttcttctttctttctttcttcctttctttctttctttttttttctttctttcattttttgttttgttaaaaaagcTGTGTCTATAGTTGTGAAAGGGCATGCCAGTCGTGGGATGactgtatgtacagtacagatCTATAAATTATGTGAAGgtgtgtataaaaatatttgCCAAATAACCATCCTTAATGTAAATCAAAAGATGCAATGTAAATCATATAGAGGTGGGTGCATTTGCGGTCCACAAGTATTAAAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95496 lncRNA upstream 133031 5947878 ~ 5950820 (+) True G76486
TU95493 lncRNA upstream 137798 5945706 ~ 5946053 (+) True G76484
TU95468 lncRNA upstream 182869 5897310 ~ 5900982 (+) True G76460
TU95439 lncRNA upstream 307677 5775956 ~ 5776174 (+) True G76434
TU95420 lncRNA upstream 311902 5771674 ~ 5771949 (+) True G76418
TU95571 lncRNA downstream 75674 6161456 ~ 6166615 (+) False G76550
TU95570 lncRNA downstream 79540 6165322 ~ 6166615 (+) True G76550
TU95577 lncRNA downstream 81829 6167611 ~ 6168308 (+) True G76555
TU95708 lncRNA downstream 656150 6741932 ~ 6742239 (+) True G76658
TU95709 lncRNA downstream 668739 6754521 ~ 6754936 (+) True G76659
AMCG00009926 mRNA upstream 85259 5986267 ~ 5998592 (+) True AMCG00009926
AMCG00009922 mRNA upstream 143761 5933021 ~ 5940090 (+) True AMCG00009922
AMCG00009923 mRNA upstream 188874 5890280 ~ 5894977 (+) True AMCG00009923
AMCG00009919 mRNA upstream 288925 5786425 ~ 5794926 (+) True AMCG00009919
AMCG00009915 mRNA upstream 315792 5766337 ~ 5768059 (+) True AMCG00009915
AMCG00009930 mRNA downstream 26514 6112296 ~ 6149391 (+) True AMCG00009930
AMCG00009928 mRNA downstream 64236 6150018 ~ 6154858 (+) True AMCG00009928
AMCG00009936 mRNA downstream 94621 6180403 ~ 6185389 (+) True AMCG00009936
AMCG00009934 mRNA downstream 139754 6225536 ~ 6241567 (+) True AMCG00009934
AMCG00009935 mRNA downstream 164118 6249900 ~ 6284991 (+) True AMCG00009935
TU94664 other upstream 4720017 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4748801 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4756287 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 5046409 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 5212116 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5063844 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5614924 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9555179 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 9971749 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11138100 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile