RNA id: AMCG00009930


Basic Information

Item Value
RNA id AMCG00009930
length 5625
RNA type mRNA
GC content 0.48
exon number 36
gene id AMCG00009930
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6112296 ~ 6149391 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGACGAGATACATGAGACAGTTCCTGCTCGAGAGTGTCTGTGACCTGACTAAATGTCTTTATGTCCTCAGGTGGATGGAGGCCTGTCTGGAGGAGGAACTACCCGCAACGACTGAGCTGGAGGAAGGTCTGCGAAATGGCGTCTTCCTGGGAAAGCTCGCCAAATTCTTTGCTCCAAAAATGGTGTCTGAGAAGAAGATCTATGACCGAGACCAAGCTCGTTATAAGcGATCGGGACTTCATTTTcgacacacagacaacactgtaCAGTGGCTGAGGGCTATGGAGTCGGTAGGATTTCCAAAGaTCTTTTATCCCGAGACAACAGACGTTTATGATCGAAAAAATATGCCTCGGgtgatatattgtatacatgCATTAAGtTTATACCTGTACAAACTGGGAATAGCACCACAGATACAGGACTTGCTAGGCAAAGTCGATTTCACAGAGGAGGAGATCAGCAACATGCGCAAAGAGCTGGAGAAGTATGGAATACAGATGCCTGCCTTCAGCAAGATTGGGGGAATCCTCGCCAATGAGCTATCGGTGGATGAAGCTGCATTGCATGCTGCGGTCATTGCCATCAATGAAGCGATAGACAAAGGATTTGCAGAGCAGACTCTGAACACCCTGAAGAACCCCAATGCCATGCTGAGGAACACACAGGACAGCCTGGCTCAAGAATACCAGGATAAGCTCAGTCAGACCAAGAAGATCAAACGGGAAAATGCTTCAAACAGGAGCTCTTCTGTGTCTTCTGAAGAAAGAGATGTGTATGAGGAGTTACTGACCCAGTCAGAGGTCCAGAACAGTGTTAACTTTGTGAACACTAAAGCAGCAGTGAAGGAGGTGAATGATGCGATCAGCAGGCAGGATGAAGGCGCTCTATTGGCCAGCCTGAGCCTCCCAGCCCTGGGGCTGCTGGGAGTCCTGGAAAGCAACTCTCCATGGTACCTGGACCACTTCTGCTCCTGTAAAGAACAGAAGACGCAGCTGGAAAAGGATGAGATCCAGCGGGTGGTAAGCTCCTGCAATGAATTTGCAGAAGCTCATAAACaaaAACTGGAGTCTGTTGCTGCGATCAACACTGCGATCCGCAGAGGCAGCCCCCCCCACACCGTCGCTGAACTCCAGAACCCTGCAGCGCAGCTCCCCATCGTGTACGAGTCGGCGGCCGACCTCTATCAGTCAGAGCTGTTCAACTTGCAGAAACAGAGCCCTGGTGCGGACCTGGGACATGAGGAGCTCTCGGTCGCTGTGGAGATGCTGTCAGCCGTGGCTGTATTGAACCAGGTGCTGGACAGCAGGGACTCGCAGGGAGTAATCGAGCAGCTCAGCGACTCGCCCATGGGCTTCAGCAACATGGACCCTGACAGCCTGCAGAGGTATGCCGAGATGCTGATCTCTCTCAAGGCTGAAGCAGCTGCTCAGGGACAAGAGTTTCTGACCTGGAATGACATCCAGAAATGCATCGATGCCATCAACACCCAGGTCCACGAGGAGCATGAAAgAATCATTGCTATTGGTCTGATAAATGAGGCTCTTGATTCTGGGGACCCTGAAAAGACTCTGGAAGCGTTACTGATGCCTACAGCCAAACTACAGGGAGTGAATCCCCCGACAGCCAGGCACTATCATGATGTTCTACAGCAAACTAAAGCGGACATATGTGAGAGTTCTGGAGATGGCTCGGCTGAGCTGTGGCTGGACCAGATCCAGGACGGGATTCACTGTGCCAACAGGAACGAAGAAGAGGCCATTAAATTGGCTGCTGCAATAGCAGATATTAATCGTGAGGTAGCGGGGGGAGACGTGCAGAAGACGTTGACAGCACTGACAAGACCCGACGCCGGCCTCCGGGGCGTGCAGCCAGAGTGTGCAGACACTTACTTTAACAACCTGTCAGAGAAACAGACCCAAAACACTGGAGAAGGATGCAACGGCAGTGTTTGGGTGAAGCACAAAATCAAGGACAAATTTGCTTTCTTCTACAACTTGCAAAGCGGAGAGAATATGTGGGCTGAGCCAGATGGCTTTAGCATCATCGGGGGCATCACTGCGGATTATAACCGAGAGCAGCTGTGGCTGGCTCACGAGAACCTCGTCATTCAGCTGCAGGCCAGGGCCCGGGGTTACCTGGTGAGGACGTCACACTGCAAGAGACGGGAGTACCTCCGCAGACAGGAGCCCACAGTCATCAGGCTGCAGGCTTCTTGGAAAGGATATAAACAGAGGAAGACTTACAAGGACAGACTGAAAGTACTGCAGGATAATGCGGCAGCCATCGTCAAGATTCAGTCATGGGTGAAAATGTGGACTGCAAAACGAAGATATTCTCAAAGGCTTCAGTATTTTAAAGACCATGAAAAGGAAATTGTTAAGATTCAAGCTTTCCTGAGGGCAAATAAAGCCAGAGAGGATTACAGGACACTGACCGGCTCTTCAAACCCTCCTCTCAACGTGGTGCGCAAGTTTGTCCATCTGCTGGATCAAAGCAACCTGGACTTCCAGGAGGAGCTGGACATGACCCGCTTGCGAGAAGAGGTCGTCACCAAGATCAGGTCTAACCAACAGATGGAGAAAGACCTCAATCTGATGGACATTAAGATTGGGCTCTTGGTGAAGAACAGGATCACCCTGCAGGATGTTGTGTCTCACAGCAAAAAGTTAAACAAGAAGAGCAAAGGGCAGGTTGGCGACATGGGCATGGGCGATAAGCAGGGTATTAAAGGCCTGAGCaaggagaagagaaagaaactgGAAGCTTACCAACATTTCTTCTATCTGCTTCAGACCAATCCTACATATTTGGCCAAGTTGATCTTCCAAATGCCCCAGAACAAGTCCACAAAGTTCATGGACACGGTCATTTTCACACTGTACAACTATGCCTCTAACCAGCGAGAAGAATACCTGCTGCTGAAACTCTTCAAAAcggctctggaggaggagatAAAGTCTAAGGTGGACCAGATACAGGACATTGTCACTGGCAACCCCACCGTCATTAAGATGGTGGTCAGCTTTAACCGTGGGGCGCGAGGTCAGAACGCTCTGAGGCAGCTGTTGGCTCCCGTGGTTAAAGAGATCATTGAAGACAAATCCCTGGGCATAAACACCAACCCAGTGGATGTGTATAAGGCATGGGTGAATCAACTTGAAACGGCCACAGGAGAGGCAAGTAAACTGCCTTATGAAGTCACAACAGAACAGGCCTTATCTCACGAGGAAGTGAGGGCTAAACTGGAAGTATCAAACCGGAGTCTGCGCACTGCCACGGACAAAGTGCTCAACTCCATCGTGTCCTCCTTGGATAATATTCCTTATGGCATGAGATACATAGCCAAAGTTCTGAAGAATTCACTGCATGAGAAATTCCCAGATGCAACAGAAGATGAGCTTTTAAAGATTGTGGGGAACCTGCTGTACTACCGCTATATGAACCCTGCCATCGTTGCCCCCGATGGCTTCGACATCATTGACATCACTGCTGGGGGACAGCTGCACACAGACCAGCGCAGGAACCTGGGCTCGGTGGCCAAGGTGCTACAGCACTCAGCCGCCAACAAGCTGTTTGAGGGGGACAATGCGCACATGACCTCCATGAACAACTACATATCACAGACCTATCAGAAATTCAGGAAATTTTTCCAGGCAGCGTGTGATGTCCCCTCACCTGAGGAAAAGTTCAATGTTGATGAATACTCCGACATTGTGACTCTCAGCAAACctgtcatttacatttcaatagaGGAAGTCATCAACACTCATTCGCTGGTACTAGAGCACCAGGATGCCATATCCCCAGATCATAATGACCTCCTGCATGAGCTACTGGAGGATCTGGGAGATGTTCCTGATGTGGAGTCTTTACTGGGGGAAGGAGCGGTGGACCCGAATGACCCCAACAAAGAGAATACACTAAGTCAGCTTGCCAAAACGGAAATCTCCCTCACCCTCACCAGCAAGTTTGAGCTGCGAGAGGGAGACGACAAAGACATGAAAAGCCTCATGATAAAAACAAAGAAGCTGATTGTGGATGTGGTGCGAGTCCATCCAGGAGAGACACTGATGGAGATCTTGGAGAACCCGGCTTCTGCCACACAGGAATCTGAACATGCAAAGATAGTTGAGAAGCGTGCCGTTCAGGACGCCAAAACCCCCgataaaatgaaaagcagccaGTCCATGCTTGAGGACGGGCAGCTCCCCTTGGagcagaagaaaaggaagatcCTGAGGAACCTGAGGACACTAGAGCAGGCAGGCCTGGTCTCTTCAGAGAACAAGTACCAGGAGATCATCAATGACATCTCCAAGGATATAAGAAACCAGAGACGGTATCGTCAGCGCAGGAAGGCAGAGCTGGTGAAGCTGCAGCAGACACTGAATGCACTCAACTCCAAGACAACCTTTTACCAGGACCAGATCAATTATTATGACACCTATATCAAAACCTGCTTGGACAACCTCAACAGAAAGAACTCCAGGAGGTCCATAAAGCTGGATGGgaaaggggaggagagaggcagCAAGAAGTTCAAGCAGCAGTCGCTGAAGTACACTGCGGCTCGGCTCCACGAGAAAGGAGTCATCCTGGAGATCGAGGGCCTGCAGGCCAACCAGTTTAAGAATGTCATGTTTGACATTTCACCCAGTGAAGAAGTTGGTGACTTTGACGTGAAAGCCAAGTTTATGGGAGTCGAAATGGAAAAAGTTCAGCTTCACTTCCAGGATCTTCTGCAGCTGCAGTATGAGGGAGTAGCGGTGATGAAGATGTTTGACAAAGCTAAAGTCAACGTTAACCTCCTGATATTCCTGCTGAACAAGAAGTTCTATGGAAAGTGAGGCACTTGGGGACACCTGGATCTCTTTGCATCAGTGCTTCCCACGTCCTGCTCTCACTGTACCttgcatttgaaatactttATTGTACCGTTTAATTTTGTAAAGGACTGAACTTTAAGGAAATAACAGATGTGTGCTTTATATTGGTGATGTagaaagaatgtatttttcatcattGAATGGCAGTATTGATTTAATACTGAATAATTGTCAGTGTATGTTATGCCACTGTGTTCGGGAGGTAATccgaaccaaaacaaaagtgacTAAAGAAAAGCCTTTGAATCTGGATTAATCTTTTAATCTGAATTaactggaaataattatttaatatcaaCCAAAAATCTCTGGCGGTGTTTGATTAAGGGCTTGGGGGTGTTTGTTTTCGGATTCAGCTGGGTGATTGTATATggagtatattttaaaattaaaattaatttttatACATAAAGTTATATGATCACACTTGCTTTcacttaatgtaaaaaaaaaaccatgaaTGAATATTTTTGTGTAATATGCACTACTGCCTTGTGGTCATAGGATCTCAATCTGTAGGCACCAAGTAGTAAAATGCAATATTCCCACCAACCctcactgtgttttctgtttatttaatgtgacCCTTTAATCCTTCACCATAGTACAAGGCTGTGCATCTTTTCAAAGCGACATTCCTTTAATTCCTTTGTGCTTCTTTAATAAATAGAAAGTGCCTTAATtgccaaaaaaaagttttgttaaaatcaaaataaatgagaaccttgaaatgca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95533 lncRNA upstream 26514 6083851 ~ 6085782 (+) False AMCG00009929
TU95496 lncRNA upstream 161476 5947878 ~ 5950820 (+) True G76486
TU95493 lncRNA upstream 166243 5945706 ~ 5946053 (+) True G76484
TU95468 lncRNA upstream 211314 5897310 ~ 5900982 (+) True G76460
TU95439 lncRNA upstream 336122 5775956 ~ 5776174 (+) True G76434
TU95571 lncRNA downstream 12065 6161456 ~ 6166615 (+) False G76550
TU95570 lncRNA downstream 15931 6165322 ~ 6166615 (+) True G76550
TU95577 lncRNA downstream 18220 6167611 ~ 6168308 (+) True G76555
TU95708 lncRNA downstream 592541 6741932 ~ 6742239 (+) True G76658
TU95709 lncRNA downstream 605130 6754521 ~ 6754936 (+) True G76659
AMCG00009929 mRNA upstream 26490 6059242 ~ 6085806 (+) True AMCG00009929
AMCG00009926 mRNA upstream 113704 5986267 ~ 5998592 (+) True AMCG00009926
AMCG00009922 mRNA upstream 172206 5933021 ~ 5940090 (+) True AMCG00009922
AMCG00009923 mRNA upstream 217319 5890280 ~ 5894977 (+) True AMCG00009923
AMCG00009919 mRNA upstream 317370 5786425 ~ 5794926 (+) True AMCG00009919
AMCG00009928 mRNA downstream 627 6150018 ~ 6154858 (+) True AMCG00009928
AMCG00009936 mRNA downstream 31012 6180403 ~ 6185389 (+) True AMCG00009936
AMCG00009934 mRNA downstream 76145 6225536 ~ 6241567 (+) True AMCG00009934
AMCG00009935 mRNA downstream 100509 6249900 ~ 6284991 (+) True AMCG00009935
AMCG00009940 mRNA downstream 380673 6530064 ~ 6538910 (+) True AMCG00009940
TU94664 other upstream 4748462 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4777246 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4784732 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 5074854 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 5240561 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 5000235 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5551315 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9491570 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 9908140 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 11074491 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile