RNA id: AMCG00009934


Basic Information

Item Value
RNA id AMCG00009934
length 2358
RNA type mRNA
GC content 0.48
exon number 16
gene id AMCG00009934
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6225536 ~ 6241567 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAAACATCACAGCTTTCCAAACAGTAactttctttattataaaacaaaaatgtcttctAGGAAACTAAAGATGGGAGTTCGTTatatcatgtttattttcacgTTTCAGGTTAATCGGATGAGCGGAATTTAAGAGGACACTGGATTATTGATGTGAATCAATTTGCCAAACAGCGGGGAAGCATGTAGCTCACGAAAGCAGATTTGAGAAGGGAGCTGTATCATGACAACAAACGGGGAAGAAGGCTCAGAGAGGGAGCTGAGAGAGCTCAGCTTGAAGGTCGAGACTCTGGAGCAAGAACTGAAAAGCTGCAAAAGTGAGCTGTACAAGTTGCAGAAGCAACTTAATAAAACTGAGCGCTTGTATAAGAACACGGAGAGCTACAATGATGACCTGCGAAAGCAGGTTGATAAACTTAGCAAAGAAATTCACGacaggaagaagagagagaaaaacagaacagaggCAGAAACACAGACTGGAACTTCCTCTTCCTGGAATGAATCTGattattactactactacggACCATATTACCAGAGTGGAAATGAGGGTACCGAATCAAATCCGGTGACCAAGAAAGATTCAGAATCTGATGTACAACAGAACCATGGGACAGTGGCCACTGATGATGATGTCATGGGAAATGCCAGTGAACAAGAAAGGAAGGGCACCGCTGCAGTTCCAGAGGAATCTGACGGGACCTCAATAGCAGACATCTTGAGAGCCACGGCAGAGGAGGCAGTATCTCAGACTGGATTTGTCTTTGACGAATACTCAGGGATGTATTATGACCACAGCACAGGGTTCTACTATGACTCGaCAAGTCAGCTGTACTATGATGCCAACACCGGGATATACTATTACTATGATGCAGACAGTGGGCGCTACCAGTTTCATTCCCGCGTGGATGTACAAGCCGTTCAGCCAGATTCAGACCCAAGCCAGGAAAAAAAGGcgaaaaagagaaggaaagggaATGAAAGAGCCGCAGCTCCCGATGACCAGGACCTGAGAACTGAAGATCCAAAGTGTCACACAGTTCCTCAAGAGGAGGTGGTCGATGGAAAGATGCTAGAACAAAAACGCAAGAGGACAGGGCTGCTCCATAGAGCAGGGGCAGAAGGGCATAGGTCTGAGAGCCATAGCCCTAACTGTGTAGAAGACGAGGATGTGGCAATGACTGGGGATATGAGACGGGGCCTGCAGAGGTGTCACAGTCATGACactgagagtgagagtgagccCGAAGAGGGAGAGCTCACCGAGTCCGAGAGAGAGGAGGGCTCTTCTGAGGAGTGGACGGCCAGTGAAAGCTCTGACCCGTCAGACCACCAAGAAGAGCAAGCATGGCCACCGTGCGTTAGAGTGACTGTTGTCCGCTCACCAGTGCTGCAGACTGGAACTCTCTTCATCATAACAGCAGATACTCCAGCCACCATCGGGAGAGAAAAAGACATGGAACATGCGATAAGAATTCCTGAAATTGGTGTCAGTAAGtTCCATGCAGAAGTATACTTCGACCATGATTTACAAAGCTACGTACTGGTGGACCAGGGAAGCCAAAATGGGACTGTCATCAATGGAAACCGAATTCTGCAGCCTAAAGCTAAGTGTGATCCCTACACTTTGGCACATGGGGATGAAATAAAGATGGGGGAGACGGTCTTATCTTTCCACATCCACTCTGGGAATGACACGTGTGACGGCTGTGAGCCGGGGCAAGTCCTAGCACACCTAAGCCGCAACAAGAAGGCAGAGCTGAGTGGATCAGTGCTGAGCAAAGAGGATAAGGAGGCGCTACGCCAGAAAGAGCTGAAGCAAATGAAAGTCAAGTATGGTTTGAAAAGCAGCGATTATGAGGCGGCCACAGCCCTGAAGAACTCGAAGTACAAGGACCGCGCCGAGAAGCGTCGGCAGAAAGTGGGCAGCGAGGGGACCTTTCAGAGAGACGATGCTCCGGCTTCTGTTAACGTTGAAATCAGTGATGGCAACAAGGGACGGAAGATGCTTGAGAAGATGGGCTGGAAGAAAGGAGAGGGACTGGGCAAAGATAAAGCAGGCAGGAAAGATCCAATCCAGCTAGAGATGCGAAAGGCACAAGCAGGACTCGGTGTCAGCGCCCCGTTATCTGTGGAAGATGGGACActactaaaaactaaaaaccagAAGAACTGGGATAAAGCCAGAGAGAGGTTTGCAGACACCTGCCAAACTAAAAAgtccacaaaaaagaaagacaatcCCAAAGCTAAATCCTGGGTAAAAAGTGAAGATCGACACAGCGAGGTCCTGCGCATCGTGCAGCTGCAGGCCCGGCCGCTGTTTCTGAATGGGCTTCACTTTAGGAGGCTA

Function

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0051897 positive regulation of protein kinase B signaling biological_process
GO:0060841 venous blood vessel development biological_process
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95577 lncRNA upstream 57228 6167611 ~ 6168308 (+) True G76555
TU95571 lncRNA upstream 58921 6161456 ~ 6166615 (+) False G76550
TU95570 lncRNA upstream 58921 6165322 ~ 6166615 (+) True G76550
TU95533 lncRNA upstream 139754 6083851 ~ 6085782 (+) False AMCG00009929
TU95496 lncRNA upstream 274716 5947878 ~ 5950820 (+) True G76486
TU95708 lncRNA downstream 500365 6741932 ~ 6742239 (+) True G76658
TU95709 lncRNA downstream 512954 6754521 ~ 6754936 (+) True G76659
TU95713 lncRNA downstream 549199 6790766 ~ 6792207 (+) True G76663
TU95821 lncRNA downstream 817277 7058844 ~ 7062734 (+) True AMCG00009959
TU95838 lncRNA downstream 933912 7175479 ~ 7231357 (+) False G76770
AMCG00009936 mRNA upstream 40147 6180403 ~ 6185389 (+) True AMCG00009936
AMCG00009928 mRNA upstream 70678 6150018 ~ 6154858 (+) True AMCG00009928
AMCG00009930 mRNA upstream 76145 6112296 ~ 6149391 (+) True AMCG00009930
AMCG00009929 mRNA upstream 139730 6059242 ~ 6085806 (+) True AMCG00009929
AMCG00009926 mRNA upstream 226944 5986267 ~ 5998592 (+) True AMCG00009926
AMCG00009935 mRNA downstream 8333 6249900 ~ 6284991 (+) True AMCG00009935
AMCG00009940 mRNA downstream 288497 6530064 ~ 6538910 (+) True AMCG00009940
AMCG00009945 mRNA downstream 424123 6665690 ~ 6670486 (+) True AMCG00009945
AMCG00009949 mRNA downstream 443200 6684767 ~ 6685849 (+) True AMCG00009949
AMCG00009948 mRNA downstream 458853 6700420 ~ 6724635 (+) True AMCG00009948
TU94664 other upstream 4861702 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 4890486 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 4897972 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 5188094 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 5353801 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 4908059 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 5459139 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 9399394 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 9815964 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 10982315 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile