RNA id: AMCG00009952


Basic Information

Item Value
RNA id AMCG00009952
length 4374
RNA type mRNA
GC content 0.46
exon number 12
gene id AMCG00009952
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6814282 ~ 6833737 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGCAGGAGCTTTTGCATCTAATCTAAATAGAGATGTAGAATCTATTTCATCATCAGCACAACAAATTTCAAACGTCCATAATCCTGGAGAACCAATAGAAGATCCTGATGGTGAGAAAGAGTTATTTAATATTGTCTGTGAAGGCTATGAAATACTGAACATTATTGTACCTCCAAAGATGTTGACAGTTGATGAAGAGGAAAGTAGTTATATGCCTGATAACTTGTCATATTTGGAAGAAAATCCACTAATTAAATCCAAAGTTATAGAAGACCTGACAGAAGAGGAACAAGCTCCCATGTCTGAGAGAGAAACTGAAGAAACGGTGAAAAAAGTGGTGAGTGAATCAAAGACAGAAGCAGTTGAACAACAACAGGAAATGGAGAAACTGGAAGAAAATGAATCTATAAACCTTGAAAAAGACATTATACCAAATAATTTGGAATCAGAGGAGAATGCAGCTGAGCAACCACctaaaagaaatggaaatgggGACTTGGATTATTTTGAGAAGTTCACATTGTTAGATGACCATGTGCCAGAAACCAAACCTTTAGACACAGAAAATGAACCCTCTACGACCCAAGAGCAAGAATCACCACAGAGTATATCTGTCTCTAAAGACcgtaatgtgtttgtttttgtagatgATGTAGAAATTGCAAGTGAACATTTAGATGAAGTATTTTATGGAAGTCATCTTCTTCATGATCCGGAGGATTATtccacaaacaagcaaaacacagaGGACGAAACAGAGGTCAAAGCAGATGCAAGTCAAAAGTGCAAGCCCAAATTCAAGAAAAGTGGTACAGCTTTATTCAGCAATGAAGAGGAGAGTCTGACACGCTGTTATTATACAACAACTACCAAAATAATTGATCAATTTCTCTTAGAGGAACCACCAGCTATGTCATTTCTCTATACAGATCTGTATGAACAAGCagttggagaaaaaaagaaagatgacaGTGAACCTTCAGATGAGGAGAGTGTTGTTTCCGAAGGGACCTTCACAAGGAGGCTGTCAGATACAGAGGATAACATGGGTGGGTACTTtgaaaaatatagtttaaaagaTGATGTTCCATTATCTGCCGATGAACCACAAACTGAAGAAGATCAAGAGGGAGTTGAAGTAAGAATGTGGTGTCAAGATGAATTTAAGCTCACTGGTAGTATTACAGAGGAAAAAGCAGAAGCTGTCATTAGGGAAGTTGAAGTGTTTGCAGAACCTTCTGGCAGGATCCCTGAGTTGTCACCATGTGAAGAAAATGACCAGCTTTTTGCCATAACAGAGGAAATATCAGAAGATTTAGATTTCCAGCCTGTGTTTGATGATGAAAACACTGTCTTAACAGAAGAAATGGAAACAGTTAGCAAGAGCCCAGAGTTATCTGATGAAACTCTGAAAGTGAAGGAAACACAGCCAATGGAAGAACAGAGTGAGGAAAACCTTTGTGTTCCCCATGGGACCGAAATCAGTTACGTCTCCGAGCATGCAGAACTCTCAGAAGATATTCATAGTGAGGAAACGTCAGAAGTTCAGGTTTTGATCCAAAGTCACAAGGAAATTCTTATGGAaaaagaagaagatgaagaggaAGTAGGTGAAACTGATCAAACCATGGCAAGTGTTGAAAGTAAGCATGAAGATATCCTGGAAGATCAGGTGCTCAGTGAACCTTCAGAAGATATGTATTCAGCTCCAGCCAAGCAGGAATCCACAGCGGACATCCCTGTTTCTGAAATTGCTGACAGACCAGAACAGGCAGTGCAACCTACCCCTGAGAGTGAGGCTGTGTCAAGCTTTGAGTTGGACCTGAAGCAACCAGAGAAAGCAGCTGAGCATGGTGAAGTTTCGCTCATCTCGGACTGTAATGAAAGTAGGGAAGTTATATTAGACAGAGTAGGTGGCACTCCACAGCAGATCAGTCAGAGTAAGGGAGCCCCTGACACGACTGAAAAGGTAATCGACAAAACCCATGAGAAGGATGTTGAAGTTAATGAAGGTCTACAAAATGTTCAGGAATGGGATAGTGCCTACCTGTCCGCTGCAGGATCAGATATTTTAGTGAGGAGTGAAGAGCAGGAAATAGCAAGCTCACTGCAGCTTCCAGGTAGAGCAGtaccagaaaataaagaaaatgttatgccAGAAAAGCAGGATAGGGCTGTACAGACTGTGGATGAAATTTCTCTTCTTAGGAGTGTGGCACCCTGTGAAGAACTTTCACAGCTTGGGAAGGAGGATGTTCATTCAGAGCCAGAACTGTATCAGGGACATGAAGAAGAGGCAGCAGAAACCTTGGGCTATGAAATGGTCACCCAGCAAGAGGTGCAAGAGGACTGCACAGCATCAGAAGCAGACCTGCTGAGGGACAGGGAATACGTCAGCGAAGGAACCGAGGAACACCTTGAGCAGGGCTATGAATTTGTAGATGAGATAGGTCAAGTTTTGCCTGCAGTAGAAGCGGAGTATGAGATCATTGAGGATTTAGGCAGAACTCCCATATCAGAAGGTGAACTTGAGCAGAAGGAACCCAAAAAACCCACATTGGACACATTCTGTCTGACCTGCAGGTgtcccatctcagccattgatAAGCTCTTTGGAGATCACCAAGATCACAGTGTGTCCACATTGGATAAGGCCCACAATGACATAAAGAATAAACTGACCGAGTTGATCGCAGATTTGCAGGGACGAACGGAAAAGATTGAGGATCTCGTGGCCGAACTGGAGCTGGCGTTCAACACTGTGGAGGAGAACTGCACCAAGGCGGAGCAGGGTCTCGATGAACAGAATGATGAAATGATGAAGACGGTCCTGGAGCAGTATGAGGACATGTCACAAAAGATGGAGGACgagaagaaacacaaactgGAGCAGCTCTATGACCAAATTGTCACTTTCCAAGAGAGCATCGAGTCTGCCAAGGAGACCCTGGAGAAGACCGTGAAGGAGGTGGAGCAGCCCGATGAACTGGCCTTTGTGACTTCTGCCAAAGACATTAACAGGAgCCTGAACAAGGCCTTGCAGACGACAGTGTCACTGGAGCTCACGCCCAGCGCCTTCCCCGTGTTTGAAGATTATGCAAAAAGCACTTCAGGAAATGGACACAAATTACTGAAAGGCATTGCTGctgccaCTGTGTCTTTGTCCTCTCTGTCCCCTCTGTCCTCAGTTCCTCAGACACCTCGAGTTCAGCCACAGGAGGCCAACTctgccaccagcacctcagtcACAGTCTACTGGAAGGTCAATGAGGGTGATGTCATCGATTGCTTCCAGGTGTACTGTATGGAAGAGCCTCAAGGAGCTATGTCTGAAGAATACAGAGTGACAGTGAAGGAGAGCTACTGCACGCTAGAGGATTTGGAGCCAGACAAGTGCTACTTGGTGTGGGTCATGGCAGTAAATTACACAGGATGCAGTTTGCCCAGCGAGAAGACGTCTTTCAGAACAGCTCCCTCCAGCCCCATGATCAAGACCGAGGAATGCACAGTTTGCTGGGACTCGGCCACCATCCGCTGGAGCTCACCCAACCTCTCCGCAGTGGAGTCCTTCACCCTGGAGTACTGCCGGCAGTATGCCTGCGAGGGAGAGGGGCTCAGGTTCGTTTTAAAGGGCCTGCAGCTTCATGCTCCCCACAACACCTGCATCTTAAAATCGtgttctttttgtaggtcaatATCTGGTGTGAGAAATTGTGAACAGAAGGTCCTCTTACATCCGAATGAGAATTACCTTTTCTACATCAAAGCTGTGAACTATGCTGGAGCCAGTGAGCAGAGTGAAGCGGCCCTCATCTCCACCAAAGGCACCAGGTTCCTCCTGCTGAAAGAAACCGCCAACTCAGCCCTGCTCCTGTCCGATGACAAGACTACCATTCACTACCCTGAGCACACCTTCAGGCAAAGAGCCACCCTCAACGATTGCCTGGGGATCCTGGGAGAGCTCCTGCCTCCTCGTGGGTATCATTACTGGGAGACGGCAGTGGGTGGCAGTGAGGCCTACAGGATTGGTGTGGCCTACCCGTCCACACCACACGACAGCCCGTTAGGACAGAACAGCACCTCGTGGTGCATCCATTGCTACACAACACCCACAAGCTGCAGGTTCGAGTTCCTGCACAACAGCGTGCAGGCCGACATTCAGGTGGTTGACGTGCCCGAGAGGATTGGGACGCTGCTGAATTACCGTCACGGAAGGCTGTTGTTCTTCAACCCACAAAACGGACAGTTACTCTGCTCATGCCGCCACAGGTTCACAGAGGCCTGCCACCCTGCCCTGGCCGTGGAGAAGCCGGGCTCGCTGACCCTGCACACAGGGATGGAAATGCCAGAGCTGCTGAAACACAGTTAA

Function

GO: NA

KEGG:

id description
K24480 CMYA5; cardiomyopathy-associated protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95713 lncRNA upstream 22075 6790766 ~ 6792207 (+) True G76663
TU95709 lncRNA upstream 59346 6754521 ~ 6754936 (+) True G76659
TU95708 lncRNA upstream 72043 6741932 ~ 6742239 (+) True G76658
TU95577 lncRNA upstream 645974 6167611 ~ 6168308 (+) True G76555
TU95570 lncRNA upstream 647667 6165322 ~ 6166615 (+) True G76550
TU95821 lncRNA downstream 225107 7058844 ~ 7062734 (+) True AMCG00009959
TU95838 lncRNA downstream 341742 7175479 ~ 7231357 (+) False G76770
TU95837 lncRNA downstream 392109 7225846 ~ 7231357 (+) True G76770
TU95869 lncRNA downstream 437098 7270835 ~ 7271745 (+) True G76799
TU95878 lncRNA downstream 447239 7280976 ~ 7285951 (+) False G76807
AMCG00009955 mRNA upstream 108 6811064 ~ 6814174 (+) True AMCG00009955
AMCG00009953 mRNA upstream 3958 6796929 ~ 6810324 (+) True AMCG00009953
AMCG00009948 mRNA upstream 89647 6700420 ~ 6724635 (+) True AMCG00009948
AMCG00009949 mRNA upstream 128433 6684767 ~ 6685849 (+) True AMCG00009949
AMCG00009945 mRNA upstream 143796 6665690 ~ 6670486 (+) True AMCG00009945
AMCG00009954 mRNA downstream 24695 6858432 ~ 6877987 (+) True AMCG00009954
AMCG00009958 mRNA downstream 169266 7003003 ~ 7010244 (+) True AMCG00009958
AMCG00009959 mRNA downstream 208860 7042597 ~ 7060058 (+) False AMCG00009959
AMCG00009966 mRNA downstream 348892 7182629 ~ 7183235 (+) True AMCG00009966
AMCG00009960 mRNA downstream 359437 7193174 ~ 7204644 (+) True AMCG00009960
TU94664 other upstream 5450448 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 5479232 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 5486718 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 5776840 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 5942547 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 4315889 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 4866969 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 8807224 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 9223794 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 10390145 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile