RNA id: AMCG00009953


Basic Information

Item Value
RNA id AMCG00009953
length 2774
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00009953
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 6796929 ~ 6810324 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTCCCCAACTCTACCATCCTGGGTCGCCCACCCTTTCCCCCTAAACCTCAGACAGCTAACCATTTTAACCAGCTGCCCCTCAGGGTCTCGCCTGTGCTGTTCTCTCGGCAGCAGCTGGTTGAGTCTGAGTGCAATTTCAGGAATTCCTGCTTTCGTGGAATTCCACTCCATTCTCTTCCTCGTTTCCCATCAGTCCGCTCTCATGACTGCACCCCTGGAACCAGCGCCTCTCCACACGTCTCCCCTGTGCCAGCCTTATCGCAAGGCCGAAAgcGGAGGAGTGATGAGCACAGCCCCTGTGACCTGAAGCGACAGCGCTTCCACTCACCTGGATCCCGGCCCCTAGTGCTCAGCGCACCGTCTCCTCCCAGGGGAGTCCAGAAATCTTCAGTGCCTtcgcacgtggaggtctgtggtCCAGTCTTGTCCTCTGGCACAGCTCTGTCCCCTCGCACCCCAAAGCCAGCTGGCTGTGTGCCTCCATTAGGAGGTGAACTCCATCCAAGTGTCATTGACGGCCCATTGCCACCTGTTAAGGACAAGTTAAGTCAGCAGATCATGGAGCTGTTTCAGGTGTGCCAACAGCAGGCAGATGACCTGGAGAAGAAGGAGTTGTGCCGAGcccagctgcagagagagattCAAAGACTCTTTCCTCGTATGTCTTTTGTAGTTGTTAAGATCCACACCCCCACTTATAGTGGCATTGGAGttgAGAAGAGAGTTCGGCCCATTATACTGGTCATAAAGAAATGGGCCCGGCATCACGGAATCAACGATGCCAGCCGTGGGACTCTCAGCAGCTACTCCCTGGTTCTGTTGGTTCTGCACTACCTACAGACCTTGCCTGAACCTGTCATCCCTTGTCTTCAGAAGGCGTATCCCGAATCCTTCAACCCTTCCATGGATATCCACCTTGTGCCCAACGGACCCAGAGACATTCCTCCTTACACCTCCAAGAATGACTCCACCCTGGGGGACTTGCTTTTGGGCTTCCTAAAATACTATTCCACAGTTTTCAACTGGGAAAAGTCCATGATTTCAGTTCGTGAAGCCAAAGCTCTCCCGAGGCCAAACTACAAAGACTGGAAGAACAAGTACATTTGTGTTGAGGAACCCTTTGAAAGGAGCAACACAGCCAGAGCTGTACATGAAAAAATGAAGTTTGATACCATAAAAGCAGAGTTTATGGAGTCTTGGCAGTTACTGCAGGCGAAGAAAGACTTGAACTTCATCTTACCAGTGAGAGCAACAATACAGAAAAGATAACATACCACGCATGACTGATGGTGGACTGAACAGAAAAATGCTTCTTGACAATAAATGGACAATACTCTCTGTGATTGAGGGAATTTATTTTAGATGATGCAGTGATACCAAGTTTTCAGTTTCCCTTAATCCCTGTCAATACAGGGGGGAGtggaagaaaatgtatgaaGTGTTTGTTTGCTAAACTCTTTGACCATGTTAATTTAATTGGCATGTGTTATTGCACTGAACACAGAGCTGAACCATCTTCTTGACCACTCTTCACAAGCCagatcaattatatatttatagaaaaaaatCCTTCCCCAAAGGAAACTTTATTTGCCAAACCCTGCCCTTGCTCCATTATACATGCCAGATGTGCCCCTTAGAGAACTGCCTGGGTAAGAGGATTGAAACCACATTAGAGTAACCATGCAGGGtaagccttttctttttcttttactctCTGgatcttcatttaaaaaaatcacatgaataaaaaaaaaaatatatatatatcatatacaatgttattttaagtttcAGAGCAGTGTATTATAATTAAGATTATTTAAAGTTTAGTCctggagtttgttttttgtttatttatttactgtagtgCTTTTCTTGATTAACCAGTCACGCTTTCTGCAATGTACACTCAAAGAAACTAGTCTCACTTCACCGTACAGCTGCCTTGGCAGTTTGCTGTGCAGGCGGTGATGTCTGCAAGGTTCCTTTCATATGTTTGCTTAATGTCAACCATTGGGAATTCAACTTCAAGGACGATCAATAGCATTAGTTAAGCTTTCTGAAAGGAAGTGTGCATGCAAAGAACATTGTTGAAATGTTAAGTATCAATGGAACAACGCAGGGCTGCATGCtgcaatgtacatttattttattttattaacctttatactgtgtttttaaaccctttggaattaaaacatttgacatcAAGAAACAGGAGTCAATAGGAAGGGTTGCTGAAGCAATAGGAGCTCAGCTTCTCTGATGAGCACTCGAAGGCTGGGCTCAACCCTTAAACTGCTTTAACACAATTGCAGCGTAAGAATGTATGGATGTTATCTTGCCTGCCCACCTGCCAATGTTCAGTTTCCTTCATCTGAGCTCTGCTTCAAGTTTGTGGTGCTAATGTTTTTGGAAAAGACTTGGCTTGGAAATGTGCTCCACTAGAGAATACCttgtttaagttaattaagAGTCACCGGTGGGAGATGAGTCTATGGGAAGAAAGTAACATTCGCATGACAAACTTGAGCATGACTTTCAGTTTCAGAGTGAGACATTGTGGAAAGTTACTTTGCGGAGGGTGTGTAGCTGGGCGCTGTCTATTGAAGCACAGTCTGTGCCTGTTAATGTCTGAAAATCTATATTTGGTTGCTgcaattatgtttgttttgtcctgttttttgttttgttttgttttttggtaagtTGTCTAAGTTTTGATTAGACcttgtgtatttcaaaatataaaattaaacttttgcaAA

Function

GO: NA

KEGG:

id description
K14079 PAPD4, GLD2; poly(A) RNA polymerase GLD2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95713 lncRNA upstream 4722 6790766 ~ 6792207 (+) True G76663
TU95709 lncRNA upstream 41993 6754521 ~ 6754936 (+) True G76659
TU95708 lncRNA upstream 54690 6741932 ~ 6742239 (+) True G76658
TU95577 lncRNA upstream 628621 6167611 ~ 6168308 (+) True G76555
TU95571 lncRNA upstream 630314 6161456 ~ 6166615 (+) False G76550
TU95821 lncRNA downstream 248520 7058844 ~ 7062734 (+) True AMCG00009959
TU95838 lncRNA downstream 365155 7175479 ~ 7231357 (+) False G76770
TU95837 lncRNA downstream 415522 7225846 ~ 7231357 (+) True G76770
TU95869 lncRNA downstream 460511 7270835 ~ 7271745 (+) True G76799
TU95878 lncRNA downstream 470652 7280976 ~ 7285951 (+) False G76807
AMCG00009948 mRNA upstream 72294 6700420 ~ 6724635 (+) True AMCG00009948
AMCG00009949 mRNA upstream 111080 6684767 ~ 6685849 (+) True AMCG00009949
AMCG00009945 mRNA upstream 126443 6665690 ~ 6670486 (+) True AMCG00009945
AMCG00009940 mRNA upstream 258019 6530064 ~ 6538910 (+) True AMCG00009940
AMCG00009935 mRNA upstream 511938 6249900 ~ 6284991 (+) True AMCG00009935
AMCG00009955 mRNA downstream 740 6811064 ~ 6814174 (+) True AMCG00009955
AMCG00009952 mRNA downstream 3958 6814282 ~ 6833737 (+) True AMCG00009952
AMCG00009954 mRNA downstream 48108 6858432 ~ 6877987 (+) True AMCG00009954
AMCG00009958 mRNA downstream 192679 7003003 ~ 7010244 (+) True AMCG00009958
AMCG00009959 mRNA downstream 232273 7042597 ~ 7060058 (+) False AMCG00009959
TU94664 other upstream 5433095 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 5461879 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 5469365 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 5759487 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 5925194 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 4339302 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 4890382 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 8830637 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 9247207 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 10413558 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile