RNA id: AMCG00009973



Basic Information


Item Value
RNA id AMCG00009973
length 921
RNA type mRNA
GC content 0.57
exon number 6
gene id AMCG00009973
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 7531887 ~ 7552651 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGATAGTGTGTTGGATTCTCTGGAAGCGGTCGTGTCCCGGGTGCTCCCCCACACCGACTCGGGCAGCGTGTTCAAGGACTGTAACCATCACATCAGTACATTGAGTCCATCGCTCCTGAGTCTTGACCCATGTGTTGCTTTGGCAGTGAACGTGGTGGGGATGCTGCATGAGTTCTGGGAGAGGAAGCAGGCAGGAGGCGTCCCGGTCCGGCCAGAGAACCTGGTGGTCTATGAGTGCGCCCCCTCACCCAGCCCTCCCTTCATCTGCTACGTCACCCTACCAGGGGGCAGCTGCTTTGGCAATTTACAGTGCTGCTTCACTAAGGCAGAAGCCCGGCGAGATGCAGCCCGCATCGCACTGATGAATTCGATCTTCAACGAGCTTCCCTCTCGTAAAATAACGCAGGAGTTCATCTCTCGCAGCCTGCAGGAGGCCGCCTCTACCACCAGTGGCAGTTTAGGGGACGCCACAGATCCCAGCACAAGCATAGGTGCCTATTGCTTAATGCTGGAGTCAAATGTCGGGAAAACCATGCTGGAGTTCCAGGAGATCATGACAGTTTTCCAGCTCCTGCACTGGAACGGGAGCCTGAAGGTGTTCAGAGAGAAGAAATGCTCTCGCCAGGAAGTCATCTCCTACTACTCCCAGCACCACCTGGATGAGTACACCAGGAGCCACATGGCACTGGACTGGATCTCCAAAGAGCAGGAGGCCCCAGGGCTCATCTCCCAGGAGCTGCAGCTGGCACTGAAGGAGCTGGGGGAGGCCCGCACGGCTGGCCGAGAGCTGCGCTTTTacaaggagaagagagagatccTGAGTCTAGCCCTGAGTCAGCGCTACAATGAAGACGCTGGATCGACCTGCAGTGGGCAGAGCAGCCTGTGTGAGGCACAGTGGAGGGAGCCTCACCCATAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU95904 lncRNA upstream 96340 7434656 ~ 7435547 (+) True G76827
TU95877 lncRNA upstream 244488 7284929 ~ 7287399 (+) True G76807
TU95879 lncRNA upstream 244488 7284929 ~ 7287399 (+) False G76807
TU95878 lncRNA upstream 245936 7280976 ~ 7285951 (+) False G76807
TU95869 lncRNA upstream 260142 7270835 ~ 7271745 (+) True G76799
TU95942 lncRNA downstream 63307 7615958 ~ 7648166 (+) False G76859
TU95941 lncRNA downstream 93670 7646321 ~ 7648166 (+) True G76859
TU95947 lncRNA downstream 96839 7649490 ~ 7650191 (+) True G76863
TU95949 lncRNA downstream 99071 7651722 ~ 7652831 (+) True G76864
TU96033 lncRNA downstream 336832 7889483 ~ 7894390 (+) True G76935
AMCG00009967 mRNA upstream 3885 7519893 ~ 7528002 (+) True AMCG00009967
AMCG00009961 mRNA upstream 238985 7291064 ~ 7292902 (+) True AMCG00009961
AMCG00009960 mRNA upstream 327243 7193174 ~ 7204644 (+) True AMCG00009960
AMCG00009966 mRNA upstream 348652 7182629 ~ 7183235 (+) True AMCG00009966
AMCG00009959 mRNA upstream 471829 7042597 ~ 7060058 (+) False AMCG00009959
AMCG00009971 mRNA downstream 9843 7562494 ~ 7588246 (+) True AMCG00009971
AMCG00009969 mRNA downstream 62285 7614936 ~ 7631852 (+) True AMCG00009969
AMCG00009970 mRNA downstream 85928 7638579 ~ 7642526 (+) True AMCG00009970
AMCG00009972 mRNA downstream 90884 7643535 ~ 7644943 (+) True AMCG00009972
AMCG00009976 mRNA downstream 121913 7674564 ~ 7688493 (+) True AMCG00009976
TU94664 other upstream 6168053 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 6196837 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 6204323 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 6494445 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 6660152 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 3596975 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 4148055 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 8088310 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 8504880 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 9671231 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile