RNA id: AMCG00009985


Basic Information

Item Value
RNA id AMCG00009985
length 2835
RNA type mRNA
GC content 0.47
exon number 15
gene id AMCG00009985
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8034623 ~ 8053793 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCGTGTGCGAGGGGCGTGGCCTGACGTCACGCAGGTTACTCCTCTGCTGGACCAGGATTTCCACCTGGCCGGAGGGAGCGGATTTAGGCGAAGCTGCCGCCATGCTGAGTCTGGGCAGCGGAGGAGTGAAGCCGGGCAAGCCGTCCTTTGTGTCCTATGTCACCCCGGAGgaaattaaaacctCGGAAAAAGAGGttttgagaaaagaaaaagatctaGATTTACTGCCAGGCGAGGTGGTGTTCTGCAGCGCTTCGCCGGTCCTGAAGTACACACAGGATGAAGGCTCACAGCGGGGCGTGTTCGGGACGCTACTCTGCAGCAACTTCAAAGTTTCCTTTGTGAGTGACGAGGAGTCCACAGAGGAGATGGCCCCACTCTTCAGGAATAAACTGTATGGGGAAAATGATATCCCTTTAACATGCATAGACCAAATTTATGGAGTGaatgaggaaaagaaaaagctgatACTGGGCGGCCAAGTGAAGAGCAAGTACCCCTCGAAGATCATTATTTACTGCAAAGATCTGCGGGTGTTTCAGTTCTGTTTGACCTATGCAAAAGAAGAGGAAGCTAAAAAGATCTTTCAGGGAATTGTTCACCACAGCCTTGAGCCAAAGTCACTGAAGTGCCTGTTTGCCTTTTCCTATTTTGAAAAGGCAGGGCCCATTCCAGTTActcacagaaaacagaagaccaTAATGTTTGAAAGTAAGGAGGACTGGGCCATGGAAATGAGGCGCACTAAGGGACATTGCACATTAGTAACTGCCAATGAAAACTACAACATCTCTGAAAAGTTACCACAGTTCTTCTTTGTCCCCTCGGCTGTTTCAGAGGAAGATATCAATTCGTTCCATGGGAAAGGACTTCCTGTCTGGTGTTGGTCCCATCACAGTGGCTGTGCCCTCTTTAAAGCATCATCTTTAACAGTTGTGTTGGAAGATAGTGTTTCCCAGCCCTATATGGAGAGAATGCTCACTGCAGTTGCTCAGACCTATCTCTTCTCGGTGAAAACTGAAGACCTCTCCAGCACACTCCCAACTGTTCAAGACATACAGCAGGCCTACAACAAATTCAAGCAGTACTTCCTCATCGATAATGCTACAGAATTTTGGATTTCGGATGTGAAATGGTTCTCTTCTTTGGAAAATTCTGGATGGTTCGACATAATCAGACAGTGTCTTATGAAAGCAGTTGAGATAGTAGAGTGCttggaaaaggaaaacacaaatgtgcTCATGATGGAGGAGGATGGCTCAGACCTGTGCTGTGTGATATCAAGCCTGGTTCAGTTGATGCTGGACCCCTGTTTCAGGACCCTCTCTGGCTTCCAGAGTTTACTGCAGAAAGAGTGGGTGGCTGGCTGCCATAGCTTCCTTGATCGCTGCAACCATCTCCAGAGGGAAAAAGAATTACAAGCGCCAGTATTCCTGTTGTTTTTGGAGTGCGTCTGTCAGTTAATGCAACAGCATGTGCCTGCTTTCCAGTTCTCAGAAACCTACCTGACTGTCCTCTCTGACAGCATCCACATCCCACTCTTCAGCACGTTCCTCTTCAACTCACCACACCAAAGAGAATATGCCACCAAGCACCAGAGACAGTTATCTTTGCCCACAGCGGCCTTCAAGTCTTCTCCGAGGAAAGGCTTCTTTAAAGAGGAAACCGAAAACCTGAAGAAGATGCTGCTGGGAAAGCGGATCAGCAGGTGGATCCACTCCCCCGAGGCCACGCCGCTCACCGCCAGGGAGTTCTACCAGTCCTGGCTCAGTAAGCCTCTGGACTACCACGGGCTGTTGCTGCCCTGTCTGGATGGGCCGGCCATCAGGCTTTGGATGCAGAGGTACCTGCGTTGGATCCCCGAGGTGCAGATCTTCGGCGGCGGATCGGTGACAGTCATGAACAAAATCTCGGACCTGGTGAGCGAGATCCAGGACCTGCAGAGGGAGCTGGACCGGTGCTCCAGCAACGCGCACTCCCACAGCCAGAGGACAGAGGTTCCGGCGCGGCCCACGGCCCGCCACTCCTCATCCTTCCCCTTCGCCTCCTCGCGTGCCTGGACCTTCAGGCCGGTCATCCCCACAAGCCTGCTCCACGGCCTGACGATGGATGAGATGGTGGATAAAGACGATGACAACACTGAAGTCTTGGGCATAGTGTAAGAGTAAAACACAAGCCCTCTGTGTTTGGAAATAGCGACAATCAATTCTGAGCCACAACTGTGGTATCTCCAGAAATACTGTGCGCGGGATGTTGCATTTATTCTGTACAGTATAGAAGTTTGAGTTTTTGCACCACAACGTTTGTAAGCAAACCTAgctattttaatatgttttttagttAGCTAGAATATATGCAATGGACTAAGCCGAAAAGAGTTTTCCTAAACGTGTTTCAAATCAGATACAACGTTTACAGAAATGGAatggggaaaatatattttcccagttCAAACTTGCTGACCAGTGTCTAATatagatatacagctctggaaagaactgagaccactccaagttcagaaatcaaagttaagtggtctcttaattttttccagagctgtatatataatatacatatctTCCATTTGTAAGCTGTTCTACAAATCCTATAAGAATGACAATGTCAAACCTTGCTGCCAAGCAGCAAATGAGAAAATGTGATGGGTTACTGCAGCACAGTCAGCAATCAAATATGCCATTACATATAGTCCTTTCAGATCCAGTATGGCCATCATTTTCATGAAtctgagtttattattattgtttgtattcagtagtttatataatttatattatagtAAAGCCTAAATATAATGATCTGTTTTgtcactg

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007626 locomotory behavior biological_process

KEGG:

id description
K18085 MTMR10_11_12; myotubularin-related protein 10/11/12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96033 lncRNA upstream 140233 7889483 ~ 7894390 (+) True G76935
TU95949 lncRNA upstream 381792 7651722 ~ 7652831 (+) True G76864
TU95947 lncRNA upstream 384432 7649490 ~ 7650191 (+) True G76863
TU95942 lncRNA upstream 386457 7615958 ~ 7648166 (+) False G76859
TU96132 lncRNA downstream 260323 8314116 ~ 8317675 (+) True G77012
TU96148 lncRNA downstream 384714 8438507 ~ 8438786 (+) True G77028
TU96169 lncRNA downstream 643885 8697678 ~ 8700117 (+) True G77049
TU96195 lncRNA downstream 754558 8808351 ~ 8808607 (+) True G77073
TU96266 lncRNA downstream 1150549 9204342 ~ 9205423 (+) True G77126
AMCG00009984 mRNA upstream 4942 8003837 ~ 8029681 (+) True AMCG00009984
AMCG00009979 mRNA upstream 146551 7882634 ~ 7888072 (+) True AMCG00009979
AMCG00009980 mRNA upstream 164733 7861151 ~ 7869890 (+) True AMCG00009980
AMCG00009976 mRNA upstream 346130 7674564 ~ 7688493 (+) True AMCG00009976
AMCG00009972 mRNA upstream 389680 7643535 ~ 7644943 (+) True AMCG00009972
AMCG00009982 mRNA downstream 21412 8075205 ~ 8082608 (+) True AMCG00009982
AMCG00009983 mRNA downstream 64642 8118435 ~ 8119318 (+) True AMCG00009983
AMCG00009986 mRNA downstream 103025 8156818 ~ 8204133 (+) True AMCG00009986
AMCG00009988 mRNA downstream 216324 8270117 ~ 8310270 (+) True AMCG00009988
AMCG00009991 mRNA downstream 341159 8394952 ~ 8395968 (+) True AMCG00009991
TU94664 other upstream 6670789 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 6699573 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 6707059 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 6997181 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 7162888 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 3095833 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 3646913 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 7587168 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 8003738 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 9170089 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile