RNA id: AMCG00009988


Basic Information

Item Value
RNA id AMCG00009988
length 2995
RNA type mRNA
GC content 0.44
exon number 24
gene id AMCG00009988
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8270117 ~ 8310270 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTCCTACGCAGTGCACGTGTCTGAAGATTACCCAGATAACACATATGTGTCCAATTCCGAGAATGACGATGATGTACTAGTTACAAGAGATCCTATCCCTGTAATTTTCCACAGAATAGCAACAGAAATTAGAATAAACAATGATGCCACCAGCTGCCTGTCCATCAAACTGAAGCTTCAGAATGACAAGAGCCAGTGCCACAATGCCATAGAGGAGGACTCTGAAGGGGACAATGACTCGGAAGAGTTCTATTATGGTGGTCAGGTTAACTACGACGGAGAGCTCCACAAGCACCCACAGCTTGAGGCGGATTTGGCAGCCGTGAGAGACATCTATGGACCTCACGCAGTATCTCTCAGGGAATATGGTGCAATTGATGATGTTgacattgatttgcatattgATGTCAGCTTCCTCGATGAGGAGATTGCCCTTGCCTGGGATGTGATCAGGAAGGAGCCCGTGATCGTGCGCTTGCATTGCTCACTGACTCAGTATCTGAATGGCCCAGTTCCAACAGTGGATGTATTCCAGGTTTCTACAAAGGATAGGTTTGGGCTAGGACATCAACTGAAAAAgATTATGCAGACATTTGTCACACAGCAATGGAAGCatcaaagtaaagaaaaattaaattgcCCACACAGCAAAAAACAGACGGACAAGAAGGTGAAATCTCCACTGCACATCTTTTCAACACTGCGCAGGTCACCAAGTTACCCCCCTCCTGGATGCGGAAAGACTAAAACGAAACTGAAGCCAGAGCAAGATGGAGTTTCAAAGTCGCACAAACTGTTGCGCAGGACTTGCTCGAGTACCGTCAAGCCTGAGGATGGATGTGCCAACAAGTCTCATAAACCTCTGGGCCGCTCTCTGTCCAGTGACCCCAGGGCTGAGCAGACCGTGGCCTTGAAACCCCACAAACTCCTGAACCGGCCCTGTTCTGCCTCCACCAAGCAGGACGATTGTGCCTCTTTGAAGCCTCATAAACTTCTCCCCAGGTCGTATTCAGGAGATCCCAGATGTGAGCACAACAGCACCCTTAAACCACATAAGCTCCTGAGCCGGTCCTGCTCCAGCACTATTCGGACAGAGGAGCTGGACGGACTCAAGCACCACAGGCTGCTCAGCCGGTCCTACTCGAGCAACACCAAAATGGGCAAGACGGAGCTCTTCAAGGAGCCTGTTTCTGAGGGCAGGCGACTCTCTCTTACCTCAGGGCTCATCGGCATCCTGGCGCCATCTTTGTCCTCCCAGCCAACTCCAAACTGTGGTGCGAAGTCAATCCCAGTGAGAGATCGTGGGTTTCTTGTCCAGaCCATGGAGTACGCTGGCCAGAGGATACCAGTTCTGAATGagtactgtgttgtgtgtgatgAGCCACATGTGTTCCAGAATGGACCAATGTTGAGaCCTACGGTGTGCGAACGGgagctgtgtgtttttgctttccAAACACTGGGAGTGATGAATGAAGCTGCAGATGAAATTGCCACAGGAGCCCAGGTTGTTGATTTGCTAGTTTCCATGTGTCGATCCGCACTGGAATCTCCAAGGAAAGTTGTCATTTTTGAGCCATATCCTTCAGTGGTTGATCCCAATGATTCTCAAGCCTTGGCCTTTAATCCTCGGaaaaaggaCTATGATCGAGTGATGAGAGCCCTTGATAGCCTTACATCAATTAGAGAAATGACCCAGgCACCTTACTTGGAAATTAAGAAGCAGATGGACAAACATGATCCCCTGGCTCATCCTCTTTTACAGTGGGTGATCTCCAGTAACAGATCTCACATAGTTAAACTACCAGTAACCAGACAACTGAAGTTCATGCACACCCCTCACCAcggATCACACATAGAGAACTGGCACTCCATACTGAGGAATGGTTTAGTAGTTGCTTCAAACACAAGGCTTCAGCTCCATGGCGCCATCTATGGAAGTGGAATCTATCTCAGCCCATTGTCAAGCATTTCCTTCGGTTATTCAGggatgaacaaaaaacagcagaaaatagCTTCTAAGGATGACACTGCATCAAACAGCAAGGCTAGTGTGACCTTACAGTCACAGAAAAAGGGGCAACAACCACAGTTTTTGCAAAGTCGGAACTTGAAGTGCATAGCCTTATGTGAAGttATTACTTCTCCCGATCTGCACAAGCATGGCGATATCTGGGTAGTTCCAAACACAGATCACGTCTGTACCAGATTTTTCTTTGTCTATGAAGACGGGCAGGTGGGTGATTCCAGCATCAACACACAAGACTCTAGTATTCACAAGGAGATACTGCGAGTGATCGGAAACCAGACAGCTACTGgataaaaaatagaaagatgTTTCTGCTGCCTGAATACACTTTATTCAGTTTCAAAGCTGGGTTTTGAGCTGAAAAAGTGAGTTGATGTGATttgtaaaacaagaaacacactattgaactatttaaaataagagcTACACTGTTTATACCCCTCACACTTTGAAAGAGGTATTTACATTGAAATGGCCTATTTAGatggttacattttacatacaagtttataaataaaaggaaatttcACCAATTTGAGTAACAAACTACTTAAtgtttttagtaaaataataaataaaaaatattaaattggtATTACACTTTCTTTCAAAGTTTTGAGACGTCCAGTTGTTGGGCCTTTTTAGGAACGTTAATTTTTTCCTAGTTATTAAAGGTGCCGAACAGCAGACCTTCCTGTTTACTTTCTAAGagctgtatgtttttaaatgaccaaGTACTTGTCATTATCCTGAAGGTGTTAGTATGCACTTTAatgtcattttgtattgtaacacattttaaatgaaatgctatAGGAAAATAATGTCTATTTTGTCCAGGACGTTTCATTAAGCAAAATTACCttgataatgaaaaataaaattcctTGTATTGGCGTAAACACTTTTGAATTAACACAGTGGTGAAAAGTTAGCATTTCATTCAACTTAACCATGTAAAAAC

Function

GO:

id name namespace
GO:0003950 NAD+ ADP-ribosyltransferase activity molecular_function

KEGG:

id description
K15258 PARP6_8; poly [ADP-ribose] polymerase 6/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96033 lncRNA upstream 375727 7889483 ~ 7894390 (+) True G76935
TU95949 lncRNA upstream 617286 7651722 ~ 7652831 (+) True G76864
TU95947 lncRNA upstream 619926 7649490 ~ 7650191 (+) True G76863
TU95942 lncRNA upstream 621951 7615958 ~ 7648166 (+) False G76859
TU96132 lncRNA downstream 3846 8314116 ~ 8317675 (+) True G77012
TU96148 lncRNA downstream 128237 8438507 ~ 8438786 (+) True G77028
TU96169 lncRNA downstream 387408 8697678 ~ 8700117 (+) True G77049
TU96195 lncRNA downstream 498081 8808351 ~ 8808607 (+) True G77073
TU96266 lncRNA downstream 894072 9204342 ~ 9205423 (+) True G77126
AMCG00009986 mRNA upstream 65984 8156818 ~ 8204133 (+) True AMCG00009986
AMCG00009983 mRNA upstream 150799 8118435 ~ 8119318 (+) True AMCG00009983
AMCG00009982 mRNA upstream 187509 8075205 ~ 8082608 (+) True AMCG00009982
AMCG00009985 mRNA upstream 216324 8034623 ~ 8053793 (+) True AMCG00009985
AMCG00009984 mRNA upstream 240436 8003837 ~ 8029681 (+) True AMCG00009984
AMCG00009991 mRNA downstream 84682 8394952 ~ 8395968 (+) True AMCG00009991
AMCG00009990 mRNA downstream 94573 8404843 ~ 8430633 (+) True AMCG00009990
AMCG00009993 mRNA downstream 358605 8668875 ~ 8696061 (+) True AMCG00009993
AMCG00009992 mRNA downstream 414022 8724292 ~ 8760028 (+) True AMCG00009992
AMCG00009995 mRNA downstream 459207 8769477 ~ 8776011 (+) True AMCG00009995
TU94664 other upstream 6906283 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 6935067 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 6942553 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 7232675 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 7398382 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 2839356 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 3390436 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 7330691 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 7747261 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 8913612 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060773 False 3985 mRNA 0.45 26 NC_007116.7 40844968 ~ 40910749 (-)
grasscarp (Ctenopharyngodon idella) CI01000039_04985664_05005231.mRNA True 2734 mRNA 0.47 21 CI01000039 4985664 ~ 5005355 (+)