RNA id: AMCG00009990


Basic Information

Item Value
RNA id AMCG00009990
length 1134
RNA type mRNA
GC content 0.61
exon number 8
gene id AMCG00009990
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8404843 ~ 8430633 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAGACATGGGAGACCCACCAAAAAaagaagaagaagaagaagaagaagaagaagaagaagaaaaagaagaagaagaaacggCTATCAGTGTGAGCCGGCTGACGGCTGTGTTTCGCGCAGAGAAGCGGCTGGTCTCGCTGTGCGTGGGCTGCGGGAACCAGATCCACGATCAATACATCCTGCGCGTGTCCCCGGACCTGGAGTGGCACGCCGCGTGTCTCAAGTGCGCGGAGTGCAGTCAGTACCTGGACGAGTCGTGCACCTGCTTCGTGCGGGACGGCAAGACCTACTGCAAGAGAGACTACATCAGGTTATACGGTATCAAGTGCGCCAAGTGCGGCGTCGGCTTCAGCAAGAACGACTTCGTGATGCGGGCGCGGGCGCGGGTCTACCACATCGAGTGCTTCCGCTGCGTGGCCTGCAGCCGCCAGCTCATCCCCGGGGACGAGTTCGCGCTGCGGGAGGACGGCCTGTTCTGCAGGGCGGACCACGACGTGGTGGAGAGGGCCACCATGGGGGCCGGGGAGCCCCTCAGCCCTCTGCACCCAGCCAGGCCTTTACAGATGGCAGCAGAACCCATCTCTGCCAGACAGCCGGCGCTGCGACCACACGTCCACAAGCAGCCGGAGAAGACCACTCGAGTCCGGACGGTCCTCAACGAGAAGCAGCTCCACACGCTGCGGACCTGCTACGCCGCCAACCCCAGACCAGACGCGCTCATGAAGGAGCAGCTGGTGGAGATGACGGGCCTGAGTCCCAGGGTCATCAGGGTCTGGTTTCAGAACAAGCGCTGCAAGGACAAgaagaggagcatcttaatgaagcagctccagcagcagcagcctaaCGACAAAACGAATATCCAGGGCATGACGGGCACGCCCATGGTCGCTGCCAGCCCGGAGAGGCACGACGGGGGTTTGCAGGCGAACCCAGTGGAGGTGCAGAGTTACCAGCCGCCTTGGAAGGTGCTGAGCGACTTCGCACTGCAGAGTGACATAGACCAGCCTGCGTTTCAGCAACTGGTGAATTTCTCGGAAGGCGGGCCTGGGTCCAACTCCACTGGGAGTGAGGTTGCGTCTATGTCCTCCCAGCTCCCAGACACACCCAACAGCATGGCGTTGTGCTGA

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0055011 atrial cardiac muscle cell differentiation biological_process
GO:0055012 ventricular cardiac muscle cell differentiation biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0008016 regulation of heart contraction biological_process
GO:0048665 neuron fate specification biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09370 ISL1; insulin gene enhancer protein ISL-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96132 lncRNA upstream 87168 8314116 ~ 8317675 (+) True G77012
TU96033 lncRNA upstream 510453 7889483 ~ 7894390 (+) True G76935
TU95949 lncRNA upstream 752012 7651722 ~ 7652831 (+) True G76864
TU95947 lncRNA upstream 754652 7649490 ~ 7650191 (+) True G76863
TU95941 lncRNA upstream 756677 7646321 ~ 7648166 (+) True G76859
TU96148 lncRNA downstream 7874 8438507 ~ 8438786 (+) True G77028
TU96169 lncRNA downstream 267045 8697678 ~ 8700117 (+) True G77049
TU96195 lncRNA downstream 377718 8808351 ~ 8808607 (+) True G77073
TU96266 lncRNA downstream 773709 9204342 ~ 9205423 (+) True G77126
TU96265 lncRNA downstream 775002 9205635 ~ 9208519 (+) True G77125
AMCG00009991 mRNA upstream 8875 8394952 ~ 8395968 (+) True AMCG00009991
AMCG00009988 mRNA upstream 94573 8270117 ~ 8310270 (+) True AMCG00009988
AMCG00009986 mRNA upstream 200710 8156818 ~ 8204133 (+) True AMCG00009986
AMCG00009983 mRNA upstream 285525 8118435 ~ 8119318 (+) True AMCG00009983
AMCG00009982 mRNA upstream 322235 8075205 ~ 8082608 (+) True AMCG00009982
AMCG00009993 mRNA downstream 238242 8668875 ~ 8696061 (+) True AMCG00009993
AMCG00009992 mRNA downstream 293659 8724292 ~ 8760028 (+) True AMCG00009992
AMCG00009995 mRNA downstream 338844 8769477 ~ 8776011 (+) True AMCG00009995
AMCG00009996 mRNA downstream 373377 8804010 ~ 8807887 (+) True AMCG00009996
AMCG00009997 mRNA downstream 547321 8977954 ~ 8978388 (+) True AMCG00009997
TU94664 other upstream 7041009 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 7069793 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 7077279 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 7367401 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 7533108 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 2718993 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 3270073 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 7210328 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 7626898 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 8793249 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066134 True 2181 mRNA 0.44 6 NC_007118.7 29992889 ~ 29997444 (+)
grasscarp (Ctenopharyngodon idella) CI01000026_04848513_04851412.mRNA True 1553 mRNA 0.49 6 CI01000026 4848513 ~ 4851843 (+)