RNA id: AMCG00009991



Basic Information


Item Value
RNA id AMCG00009991
length 1017
RNA type mRNA
GC content 0.56
exon number 1
gene id AMCG00009991
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8394952 ~ 8395968 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGAACAAGAGCACAAAGAAAAACTACGGTAGCGTCTCAGCCATCCTGCCAGGCTTGTTTGCCTACACCCAGTGTCTGGGCTTCGTGCTGCCCCCGATGCTGCAGTGTCCTAATGGGCATCTGGTCTGTAAGCCATGCCAGAAGAAGCAGAGCTGCTGTGACTCCTGCCTGACCTGTCATGGGTCCCTGAAGCCCAGCATCTGCAACATTGCCCTGGAGGAGGTGGCTTCCATTCTTGGCTTTCCCTCCCAGTTCTGTAACATCATGACCGCCGCCGATGCCCTGTCTGTCCAAGCGGAAGATGGGGCCACCATGttgctgtgcccagtgtgctATGAGTACGTGCGACCGCCCGTCCTGCAGTGCCAGGCCGGACACGTGGTCTGCAACTCCTGCCGGGCGAAGCTGGGCCATGGTCCAAGGCATCTGACCTGTCCGAGCTGTCGTGGGCCGCTGAAGCCCCAAATTAGGAACACCGCCAAAAATAAGGTATTGTCGATTGTTCCCTTTCCCGCCGAGGTGGCTCTGGAAAGGAAATTCCATACATTTGACAGTGTCATCAACAGCAAGATGTTCGTGCACTGTGTCAGAGAGACGCTGCAGCTGCCCTGGCTGAGGAACATGGACAACCAGGCCTTTCAGAAGATCATGCATGTCCTGATGCCATTGTTCGCGCTGGGAGCAGTGCAGAACAATGAGCTGGCATCACAGCAGGAGATCCTGAAATGGATGTATGTCAATAGGGGTAATAATGACAGGACCACAGCCCTGCACATGACCTGTGAGCTGGGCCAGCTGGACACCATCAACTACCTGCTCAGCATTGGGGCCGACACAGACATCGCTGACGGCTCCGGGGAGACACCTCTGCACGTGGCGATCAAGCACAGCCGCAACGATGTGATCAGGATGCTGAAGATGAAGGGAGCCTCCCTGCGTATCCCTCCTGTGACAGTGGGCATGGAGCTGATCCAGGCCATCTTCAGGAGAGACTATGAGCTGCTGCAGACCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU96132 lncRNA upstream 77277 8314116 ~ 8317675 (+) True G77012
TU96033 lncRNA upstream 500562 7889483 ~ 7894390 (+) True G76935
TU95949 lncRNA upstream 742121 7651722 ~ 7652831 (+) True G76864
TU95947 lncRNA upstream 744761 7649490 ~ 7650191 (+) True G76863
TU95942 lncRNA upstream 746786 7615958 ~ 7648166 (+) False G76859
TU96148 lncRNA downstream 42539 8438507 ~ 8438786 (+) True G77028
TU96169 lncRNA downstream 301710 8697678 ~ 8700117 (+) True G77049
TU96195 lncRNA downstream 412383 8808351 ~ 8808607 (+) True G77073
TU96266 lncRNA downstream 808374 9204342 ~ 9205423 (+) True G77126
TU96265 lncRNA downstream 809667 9205635 ~ 9208519 (+) True G77125
AMCG00009988 mRNA upstream 84682 8270117 ~ 8310270 (+) True AMCG00009988
AMCG00009986 mRNA upstream 190819 8156818 ~ 8204133 (+) True AMCG00009986
AMCG00009983 mRNA upstream 275634 8118435 ~ 8119318 (+) True AMCG00009983
AMCG00009982 mRNA upstream 312344 8075205 ~ 8082608 (+) True AMCG00009982
AMCG00009985 mRNA upstream 341159 8034623 ~ 8053793 (+) True AMCG00009985
AMCG00009990 mRNA downstream 8875 8404843 ~ 8430633 (+) True AMCG00009990
AMCG00009993 mRNA downstream 272907 8668875 ~ 8696061 (+) True AMCG00009993
AMCG00009992 mRNA downstream 328324 8724292 ~ 8760028 (+) True AMCG00009992
AMCG00009995 mRNA downstream 373509 8769477 ~ 8776011 (+) True AMCG00009995
AMCG00009996 mRNA downstream 408042 8804010 ~ 8807887 (+) True AMCG00009996
TU94664 other upstream 7031118 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 7059902 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 7067388 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 7357510 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 7523217 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 2753658 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 3304738 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 7244993 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 7661563 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 8827914 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile