RNA id: AMCG00009992


Basic Information

Item Value
RNA id AMCG00009992
length 8546
RNA type mRNA
GC content 0.40
exon number 34
gene id AMCG00009992
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8724292 ~ 8760028 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAATCCGCAATGTGTGTATAAGAGAGGGAGTAAAGAGAACAGGTTGCTTGAAACTTTGCCATTTCTTTTGACCTTGTTTTGAAAGTCTTTGCCTGCGCCTGTGGAGCCAAGTTACATATCCCCAGAATGGATGTTATCAGGGGGAACTTTTTCACGATTCTGCACACAATCCTATGTTGCAGCATTCACTATTCACAAACTTATAATGTTGGACTGACAGGCGCTAAGGTATTTCGTGGACGCACAGAGGAACAGTTTGGGTACACAGTGCAACAACTCTCAACCTCTAGTGACAAATGGCTATTGGTTGGATCTCCGTGGACGGCCTACCCAACGAACAGGATGGGTGATATCTATAAATGTCCCATAACTGGATCCAGTGTAACCTGTCAAAGACTAGACTTGCAGGGACAGGCAACTATCTCAACAGTAACACAGATCAGAGCTAACATGAGCCTGGGTCTGACTCTTGCTCGAAAGCCAAAAATGGGTGGGTTTTTGACATGTGGTCCTCTGTGGGCCCAGCAGTGTGGAAGCCAGTACTTTGTCCCAGGAATATGTGCAGAAGTGGGCTCCACCTTCAGCCCAGCTCCGAGCTTCTCTCCTGCAATCCAGCAATGCGGAGGTCCCATGGATATTGCAATTGTTTTAGATGGGTCTTACAGTATTTGGCCATGGCCCCCTATCTCAAATTTTTTGCAGAAATTAatacagaatttaaatattGGTCCCAATAATGCCCAGGCTTTCCTAGCTGAAAATGGGGCGCGGCCAGGGGCAGCCAAGGTGATGGTGGTTGTGACAGATGGAGAGTCCCACGATCGATCCTTCCTAAAAGAATACATTGGTAGATGTGAGAGAGACAAAATCACCCGTTTTGCAATTGCTGTCCTGGGATATTATATAAGAAATGAAATTGACACGAAAAACCTCATTGCTGAGATCAAATCAATTGCCAGTACACCAACAGAGAGGTACTTTTTCAACGTATCTGCTGAAGCAGCTCTTGCGGAAATTGCAGGATCTCTTGGAGAACGGATCTTTGACATTGAAGGAACTGGAAAGGGTGGGGGCAACTTTCAGATGGAAATGTCTCAGGTCGGGTTCAGCGCTCACTATTCCAGTAAGGAGGATGTTGTGATGTTAGGTGCTGTGGGAGCCTATGACTGGACTGGAACTGTGGTTCATCGCACTGCCCAGAGAGCTGACATTTTCCCCAGGCAAACATTTGAGAAGATCCTTGAAGACAGAAACCACAGCTCATTACTCGGGTATTCTGTAACGATAATGACTGGGGAGAATTCAGAATATTATGTTGCTGGAGCTCCTCGTTCCAATCATACCGGTCAAGTGATAGTTTATACCATTAACAGCCAACAGCAGCCTAAAATTATAGACTCACAAAGAGGAGAACAGATTGGTTCCTATTTTGGCAGTGTGTTGTGCTCTGTGGATGTCAACAAGGACTCCAGAACAGATGTGCTTCTGGTTGGAGCTCCCATGTTCATGAGCGAATTGAAAAAAGAAGAGGGGAGAGTATATCTGTTTTCAGTTACCAAGGGCATTTTAAGTCGGCAAGGTTTCCTTCAAGGCCCGTCGGACTTGGAGAATGCACGCTTCGGCATGGCTATCACTGGTGACTCTGACCTGAATTTAGACGGATTGAATGATGTGATAGTTGGAGCACCATTAGAAGATGACCACAGAGGTGTTATTTACGTCTACAACGGAGAAATTACAACCATACGGAAACAGCACTCGCAGAGAATATTAGGATCAGACTTTGATAATAAGCTGCAGTATTTTGGAAGGTCTCTGGATGCCTATGGGGATTTAAATGGCGACACTATACCTGATGTGTCTGTGGGAGCCTATGGGCACGTGCTCCAGCTCTGgTCTCGAAGACTAGCGACTGTGAATGTCAATACGACTTTCACCCCTGACAAAATCAACATCCTCAAGCAGACCTGCGATGTGAATGGCAGAAAGCTCTTCTGTTTCCAGACCAGCGTATGCTTCGCGGCTTCATTTAGGCCAAAGTCAACCAATGCTTATAACCTGACACTTGATGCGGATCTTCAGTCCTCGAGGGTGAGCTCCAGAGGTTTGTTTGTGGAAAACAATGAACGGCTTTTgcagaaaaatattgaaattctcAGCACCACAACTTGTGTACAACATAAAGTTTATGTTCAGGAAGCTCCCGATTTTGTGAACTCTATTGGTCTCCGTGTTGACATTGTTCTTCAGAACCCGAACAACAACCCTGTGCTTGATGTTTATGCCCTCCGTTCTTGGGAGTTCTTTATTCCATTTTCAAAGGACTGTGGTGCTGATGAGGTGTGTTTATCAGACCTTGTACTCAATGTCAAGATGAATGAAAGGGACCAGAGCCAATCGCCAATGCTCGTCAGCTCCAAGAACCGGCGGATCTCCTTTACGGTGAAGGTGCAGAACAAGAGAGAGAATGCATACAATGCCAAGATTATTGCGACCTACTCCAAGAACCTGTACTTCTCATCTAAGGGCCCATCTGATGATGTAAAATGCAACTTGGAGACGACAGAAGCTGTGTCTTGTCAAGTCGGATACCCTGCTCTCCTGACGGGACAAGAGGCTTCATTTGATATCAACTTTGATTTCAACTTCAATCAGCTGCAGAGACTGACGTATGTGCAGTTTGAAGCTCAGAGtGACAGTAAAGAAGAATATCCTGGTGACAACACGGTTCATATCACCTTTCCAGTTCAGTATGATTCTGAAATCATTTTGACAAGagatacaaatatacatttttatgtaataaacCCGGAGAGCATAGTTCAAAATGAAGTTTCCACTGTGAACTTCCCTGTCAGCATGGTCTACCTCACGGTTTCCTTTCCTGTGTCAACTAAGGAGAACAATCCCCTGCTCTACTTAACTGGAGTTCATAATGAAATGGGCAGCGACGTGAGCTGTGAGACAAGAAACTTGGTTGATCCGCTGAAAATCTCAGAGAAACCATACATGGCATCTTTCCAAAAGGAGAATTTACGAGGAATAGAAGAGCTGGACTGTAAAAGTGCAGCTTGTAATTCGTTTAAATGTTTGATCAAAGATCTCAAACGAACAAGCCACTATTTCTTGAATGTCACAACAAGGATTTGGAACGGCACTTTTGCTGCTtCTACGTTCCAGTCTCTAAAGCTTACAGTTAGCACTGAAATAGAAACTTCACAGCCAGAACTAGTGATCATCAACCAGAAAAAACTACCGGTCCAAATTACTATCAGTAAACCAGGGGAAAAGGGAGAGGTGCCCGTGGGAGTGATAGTGGGCAGTGTAATAGGAGGACTACTCCTGCTGGCAGCACTGGTTTTGCTCTTGTGGAAGCTCGGCTTCTTCAAAAGTAAGTATGATCAGCTGATGAAGAACGCTGAGGACGATGCGGAGGCCGAGGACCTGCAGGAGAATGAGGCCTGAGCAGGGCTTTATACAATGTGTGAAAGCAATGAGAATGCAGCTTTCTCCTTCTTATCTTTTATCATCAGGCATTTTAGCATCTTTTAGCATCTTATCAAAAGGGATTTTTCATTGTGACAATGTCAAGAAGTAcaactggatttaaaaatagacttctTATAGTTCTGCCTGAATGCCTATGCACTCAACTGAAGCCAGTGAACTTGTGCCATAAAAGAGTGAACTGTGAAATGTCAGCAGTTTCAAATGACTGGCATGAATTCGGACATGCAAACCTGTAACTGcaacatttcaaacagaaaGCAGGAGAAACTCAGATGGGCATGCCAACGGTAAACTAAAGAGATTCTAGTATAATTtgacatacaataaaaatagcttGAAATCTCACTATACAGAGCACACCCACCAACTCATTATGTAAAGTAAGCAAAGCggaaatgaaatgtatatttcttatAAAATTGCCATCATagaatatttcaaatgtatattctaATGGGCGTTACTGCTATAATATTGCTGTTGAGTGAATCTTCCCTGAGCACTGCTTGTGAATAGCAAAGGGTAGTGCGAGATATAGTGAGAAATATAGTTCTAGGGAAGGGATAGCTATAAGCTTATTTTCATCAGTTACCGTGCTTAATCTACGGTATTGTTACTGCACAGATaatcttcagtgtttttatttactatGTCTTTGTTTCCCATATGCAGGCAtatgaaaatgtactgtaatgtaaatggcaaattttagaatatttttaaGCTTATTTATAAGATTAGAagaaattgtcatttagaaTTACTTGAATGTAACCATATACttcagaaaactttaaaatcacaCTCTTATCGTGTTGGATCTGCACAGatgcatttgtgtgtatgtgtgcattttgtacTGATGTTCATGGAAACATTCACTACAGTAAAACAAGACAGACCTCAACTGAAACTTGTTCTCCTCTTCAGTACAGTATACAACATTAATGCACTTAAAGAAACAGATGAGTATCTATTCAAGAAGCATTAactatttagttttattatgttAAGCGAATGAAATGAGTAATTATTAGCAAAATTAGAAAGTGTAATCCTGATGTTCAGTCCTGCTGTACATACTTGATCCGAACACATGAGGCTGGGAAGTGACCCTACCAAATATCTTCAGAAAACCCTCAGATGTGATTTTCTTCCTATGAACTGTTTATAACTGTTACGCCAGATCGGCACTCAAGACATCATTTCCAAATGCAGGGATCAGATGACTGATCAACACTTATTATACTGAAGCCTTTGTCTTTGGCTACTGTGTACATTTACTGTAGTATGTGCATTTATGCCATTGCACGTTGAAGCCTCTTCTGCTTCTTACAGCTGAAACAGTTCACTCTGTTCCACGTtctgtacataaaataataatttcaaataacaGGATTGATTATTGTAGCGGGCTGATCCTGATTGTTTTCATGTGCAGTGGTACATGCAAGGGTTTTATGATCATGGAGGACAAGACAGAAAAgcaggtttatatatatatggaaaaaattaagagaccacttaacattgatttctgaacttggagtggtctcaattttttccagagctgtatacatatatatcctAATCAGAACATTGATGATATTTCTAGACAGATAAATATGGTTGAAAACATTCTGCtgatcaatatttgttttttaaatgtactgagtAATATTACTATTTCTTAAAGTACTTTGTTTAGCAGAATTGgttaaattaacattgttttcagaCTTAGAGATGTGTGTTGCTGTCTGTTCCAAGTGTTTATATTTGCgtacaatgtttaaattaaatatgtattgcacGGAATATGAAAACATGGGATACCAAAAGCAGCACCGAATGCTTTAAACTACTGTACATAGCAGGTTGCAAACAGCTGCATCCGTATGAATTGCATTTAACAATCTTAATACCCGGTGGTCACTTGACACCTGGCCTGGCAGTCTGGATCATTTCCATCACTGGCTATATCCCTGGCACATAGTTGTctaaataaattcaataatgataatatcTGAAATGAATAAGGAAACTAACAAGAATTcctcttcattttttattttcttaccatACCCATTAAGCTGTGTTGTACATACACTTCcacaatataatttttttaagtgtacataataaaatcaaatggtATGTATATAAAGTagatgtgtacattttaattatgtagaCAGGgattagttttgttgtttgttttattcaaattctTTGGTGTAGTCATTGCAGAGCTAATTTAGGACCAGGTATCTGTGATTAGATCTATGGATCTGATGAATTACATGTCAATACTGTACTGATAGAATGTTTACTTCTGTGGACTTTTGCActgattttttatatataaaacatgggTACGATAACACTCCAGTTTGCTTTATTAGCATTATTCATTTCTAATCtattaaacttgttttattcACTGCTGGTACATCTTTGTTCTTAAAGTATAGTCCTAGTCACTGTAACacactttgattaaataaaaatgtgaagcttgtcattgtcttttgttttccgTTTTGTAAAAATCAACAGTTTACCCTTAAAGGTAAAGCTGCATTTATCACTTCACAGTGGGAGTTAGGTTGTCATTTATTAGGTTTCATATGCATCAGAAATGTCTTTCCCTTATCCTACAACAGGGGTGTGGAATTACAGGCCTTAGGGGTGTGAGGTCTTAATTACTCAATTGAAGTAATTATTAGGATAAGAAGTGAAATTACTTGTTTATTCCAGGTTTTAATCAATTGTTGATTGGGCCATATCTAAAAAACCTGCAGACCTGCAAGGACTGCTATAGCATATGCTTTTCTTGGAAGTACTCCCAACAGTGTGGTATATCCCGATCAGTGGTCGACAGTTCACACCAAGGGTAAGCTTAGTCACTATATATTAGTTGTTAACTAAccctaaacaaaaaaaaacatgtaaatacaatgtatacacGAGAACAACATGTCTTGATAAAACTGCCTGTACCCTCTACATAATGCCTCAACTAATCCAACCAAGTCACGGGCTCCAATATGCTCTTTGGGGAGATGGAGGAAGGGGGGAACAGTTCATAATGGTCCACAACTTGAAatctggaaaataattaatgtttcaatttaatCAAACTGAGTCTCTAATCTCtcgcattaaaaacaaaaaaacagtttgaggggatgtggaaaaatacatatgtgcTATACTGGGGAAAAACATActggtgtattttttatttatttactggtaACAGGGgagtatatttttatttcttgcacaTTCAAATGATTAAAGCTTAGAACCATATATTATGCGTTTCattcacttttttcattttatgttgcAAGTGGtacaaatcattttgagattgCGGATAGGATGTCTTTTTCTGTTAACACTTGTCAGTGTGTAATATATAGAAGAAGAGCCACTTCAGAATTTGACTTtcaatatctttaaatattttaatatagttattttagttcattctaaaattgtatttctaaatGTGGTGACTAGATATTTCTGCCTTGTGTATTGCAGTGACAACCACAGATGAATAAAGTGGAATACTACATAACCCAAAAATAGCTTGTCCTTAATTTtccaataaattatataaagaaTTAAATGAGAGAATTCCCATTTCCTGAAATTCCTGTTGTTCACAGTCCTCAGTTACTTCACTTAATTTCCTGCCCAAAGACACTCTTTGTTCTCCTTCCAAGAGGAACCCTCCGTTTCATAAACCTCTTTTTTCCAAATCGGAACGGTTGCTTTTAATGTATCGATGCAATATCGCACTGCCTCAAGAGACTCGCTCCTGTGCGTTGAAGAGATCCCGATGATGACACTCGCTTCAGTGACTGGCACAATCCTGAGAGACAGGAGATGCAGCAGATTCATCTTCAACCTCTTCTAAAATACCCTACATCCAAAGCACTTATAGGGAATTTAATGCAGGATAGTcaacacaaagagaaaaagacagatATTGGTAATTTGGAACATCCATTCAATTAGCATTTTTCTAAttattggctttttttttttttttctttaaataagaaCCGTTAATTTATTTCCCCAGTTATATACCTTgcgatctgtcaaagttgactTTCAATAATATCCCCTAACTGCATGAACTCACATCTGTAAGATGATTTAAAAAGGCTCAACAATGACCTTACTACAGTTCAGGCATTCGTTTCTGTTCAGTATTAAAATCAGGGGGAATGAGATGGGGAAATGACTGATGCAAGGACAGTGACCCAGCAGAATGTGGTATAAATATCCTGTTTCGTGTTTAATGTATACTATTTCTATGTGAAGCCAAAGAGGTTAGAGGTCTTACAAGTTTATCATAATATCTTACCCCAGCCTATGATGTACACAGATGTGCTTCACAGATGGCCATCTCTTTCTTATTTCCCTGAATATAGTCTTGAGCTGTGCCTCGGCCATTGGGATGTATGCCTCATATTCAAGCTGAACAACCTTCTTTCCCTCAAAACTGTTTCTCGTTGTCCCAATAAACATGGACACTGCTCCACAGGAAGGGCACACTACAGACTCGGAGACTGTATCCGTAGACAGCTTGTCAAACGTCAGCCTGATGAGGTCCCTGGCATCACTGTCACAGCCACTCATATctgtacaaaaatgtaactttactgGTCACGTGTGAGCTTGACAGCTAGCCCCCACTGAGAGGAGGAATCACGGCAACCTCGTCACCAGACTGGAGGCTCAGCAGCTGCTCCCCAAGAGCCACGTATTCCTGACGCACCGCAAGCACCACCTGGTCCCGTAGCACTGATAGGCTACGGTGTCTGTTGACCAGCTCCTGCCACAGTTGCAGGGACGTTATTTCCTGTGGCACAGAGATTGTCTCAGATCTGACGTATGCTATCTCGGCACTTTTGggaaaagaaaacacctACCTCGGTATTCATGAATGAAGTTTTATATGATACATTGACACGTTCAACTTGTTACTTTTACTTGTCGTCGCCGGCGC

Function

GO: NA

KEGG:

id description
K06481 ITGA2, CD49b; integrin alpha 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96169 lncRNA upstream 24175 8697678 ~ 8700117 (+) True G77049
TU96148 lncRNA upstream 285506 8438507 ~ 8438786 (+) True G77028
TU96132 lncRNA upstream 406617 8314116 ~ 8317675 (+) True G77012
TU96033 lncRNA upstream 829902 7889483 ~ 7894390 (+) True G76935
TU95949 lncRNA upstream 1071461 7651722 ~ 7652831 (+) True G76864
TU96195 lncRNA downstream 48323 8808351 ~ 8808607 (+) True G77073
TU96266 lncRNA downstream 444314 9204342 ~ 9205423 (+) True G77126
TU96265 lncRNA downstream 445607 9205635 ~ 9208519 (+) True G77125
TU96276 lncRNA downstream 591563 9351591 ~ 9351870 (+) True G77135
TU96341 lncRNA downstream 656402 9416430 ~ 9419370 (+) True G77192
AMCG00009993 mRNA upstream 28231 8668875 ~ 8696061 (+) True AMCG00009993
AMCG00009990 mRNA upstream 293659 8404843 ~ 8430633 (+) True AMCG00009990
AMCG00009991 mRNA upstream 328324 8394952 ~ 8395968 (+) True AMCG00009991
AMCG00009988 mRNA upstream 414022 8270117 ~ 8310270 (+) True AMCG00009988
AMCG00009986 mRNA upstream 520159 8156818 ~ 8204133 (+) True AMCG00009986
AMCG00009995 mRNA downstream 9449 8769477 ~ 8776011 (+) True AMCG00009995
AMCG00009996 mRNA downstream 43982 8804010 ~ 8807887 (+) True AMCG00009996
AMCG00009997 mRNA downstream 217926 8977954 ~ 8978388 (+) True AMCG00009997
AMCG00009999 mRNA downstream 220727 8980755 ~ 8997868 (+) True AMCG00009999
AMCG00009998 mRNA downstream 298448 9058476 ~ 9069701 (+) True AMCG00009998
TU94664 other upstream 7360458 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 7389242 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 7396728 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 7686850 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 7852557 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 2389598 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 2940678 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 6880933 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 7297503 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 8463854 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile