RNA id: AMCG00009993


Basic Information

Item Value
RNA id AMCG00009993
length 3110
RNA type mRNA
GC content 0.42
exon number 26
gene id AMCG00009993
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8668875 ~ 8696061 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttgttcCAGTATGCAACATCATTCAATGTAGATGAGAAAAATGGCATGACCTTCAGTGGTTCAGTGGAAGACATGTTTGGGTATAGTGTTCAACAGTTTGAAAACAGTGAAGGGAAGTGGGTCCTGATAGGTTCCCCTTTGGTGGGACAGCCAGCCAAACGGACTGGGGATGTCTACAAATGCCCTGTGGGCAAAGGCAATAATTCAACATGCATAAAACTCCAACTGCCTGAATTCACAACAATTCCTAATGTTACAGAAGTCAAGGAAAATATGACCATGGGAACAACTTTAGTGACTAACCCAAATGGAGGATTTCTGGCCTGTGGACCGCTGTATGCATATAGATGTGGAAGTCTACACTACACAACCGGTATATGTTCCAATGTCAGCTCTTCTTTCGAAGTCCTTAACTCCATCGCTCCAACTGTGCAAGAATGCAAGACAGCTCTTGATATTGTAATTGTTCTTGATGGCTCCAATAGTATCTATCCTTGGAGCAGTGTCATTGACTTCTTAGTAAAACTTCTGATGAGCATTGATGTTGGCCCTACAAAATCACAGGTTGGAATTGTCCAGTATGGTAAAGATGTGGGTCACGTCTTCAATCTTAGTCAGTTCAACAACACTGATGATCTAGTTCTTGGTAGTTACAACAGACAGAATCAGAGCATTGATAAGTTTATTGCAGAAATCAAGTCTATTGCGAGCCAgccaactgagcagcatttttttaatgtctcaGATGAAGTGGCTCTGGTGACAATTGCTGACACTCTAGGAGAAAGGATTTTTGCACTAGAAGCAACCGCTGATAATCAAACAGCCTCTTTTGAGATGGAAATGTCTCAAGCTGGATTCAGTGCTCATACTTCTAAGGAAGGAGTCATGCTTGGAGCAGTTGGAGCCTATGACTGGAATGGAACTGTGGTCATGCACAACGGAGAGAATTTCATAGTTCCCAACAGAAGCACATTTCACAATCCCTTTGTTGATAAGTATAATGCGCTGGCTGGGTATGTCGGTTATGACGTCCAATCAGCATCCACAGCTGATGGTGTGCTATACATTACTGGAGCACCCAGATACAACCACACTGGTCGAGTTATCATTTATAGCCTCAATGGAACTGATATTAAAGtcaaacaaatattgaatggAGAACAGATTGGTTCATACTTTGGAAGTGTTCTCAGAACTGTGGATACTGACAATGATTCCTTCACGGACATTCTCCTCGTTGGGGCTCCCATGTACATGGGTgctgaaagagaagagaagggtCAAGTGTATGTCTACAGGCTCAATAAGGAAACGTTTGAACACCAAATGACCCTGAAGCCCATCAATCAAACGTGTTGTACGGCCCATTCAGCCAGCTCCTGCAAGACCGTCAACAAGAATGAGCCGTGTGGAGCGCGTTTTGGAACTGCCATTGCAGCTGTAACTGATCTCAACCTGGACGGCTTCAATGATGTGGTAATTGGAGCACCTTTTGAGGATGACCACCGGGGGGCAGTTTATATCTACCATGGATCAGGCAAATCCATTAAGGAGGAGTATGTGCAGCGAATAGCTTCCGGTGGAGATGGCGAGAAGATGAAGTTCTTTGGGCAGTCGATTCATGGGGTGTTGGATTTAAATGGTGATGGGATCACAGATGTGACAATTGGAGGTCTTGGAGGTGCCTCTCTCTTCTGGTCTCGAGATGTTGCCGAAGTTAGAGCAAACATGTCTTTTAACCCGAGTAACATCAAcattcaacaaaaacaatgtacagtGAAGGGAAAGAATACTGTGTGTATTAAAACCACAGTGTGTTTTCATTACAACCTGAAATCAGATGACAAGTCAGAGTCTGCTGTTGGCATTAATTACACTCTGACGATAGATTTCTTAAGGAAGATCTCAAGGGGGCTGTTTCTTGGCACAGATGAGAAAACGCTTCAGATGCAGGTCGCACTCAGCAACACACTGTGCAGTATGCATATCTTCTACATGTTGGAGCAGCTAGAAACCCAGGTCTATTATAtcataatttattcaaatgttttcttccaggacaaacCTGACTTCAAAGATCCTATTAAAGTTTTTCTCAAATTTGGTCTGTCTGATGAGGAAAATGGCCCAGTCCTAGATGGCAATCTTCCAACTACATTAAATAAGTCTCTACCTTTCACAATGGACTGTGGacacaaagaaaaatgcatcACAGATCTACAACTCCAATCAACTGCAGATATAGAACAAAACAGAGGGTCACGTTACACCATCAAATCTGCTCAGGAAAAGTTCAATGTAACAGTgaccataaaaaacaacaaagatagTGCCTACAACACTAGAATTACCATCAGTTActccaaaaatataaattacgtTAAGATTATGCCTAGAGAGAAAGACTGCGAGTCAAATCGTAACATCACCTGTGCTGTAGGATATCCCTTCCTGAGAAAAGGACAGAAGGAATCTTTTCATGTTATATTTCAAATCAACAATTCACATCTGTTGGAGAATATTACGATACATTTATCTGCAACAAGTGATAGTGATGAGCCTGAATCAAGTCTTGCCGATAATTACAATACCATACAGATACCAGTGGAATACCAAGCAGGTCTAAGGTTTTCAAGTTCCATCAAAGAACATCACTCCATTGTTAAGGAAAAGGATACATTTTCCAGTGATTTTAATGCCACTGACATGATTGGGGACGAAGTGCATATCAACTATAGTGGATGTCAGTACTCAAAATGTCAGACACTGTCCTGCAAAGTAGACCCCGCAGACTCGTCTGAAGTGAACCTCACGCTGCGTGTCTGGAAGCCCACCTTTGTTAAAGCAGAATTTTCTGACCTACAAATGCTGGTCCAGGCTTTATTGTCACCCAGGGACGCCCCTTTTATCATCCTGAGCAAAGACAGTGTTAGCAGGAATgTGACAGTAAAAGTGTCAAAAGAATCTGTCGGTGGAATACCGCTGTGGCTTATAATACTGAGCATTCTTATAGGACTGCTAATATTGGCCCTAGTGATTTTTATATTGTGGAAGactgGCTTTTTTAAGAGACCATTGAAGGAAGcaacaaaagaagaaattaac

Function

GO: NA

KEGG:

id description
K06480 ITGA1, CD49a; integrin alpha 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96148 lncRNA upstream 230089 8438507 ~ 8438786 (+) True G77028
TU96132 lncRNA upstream 351200 8314116 ~ 8317675 (+) True G77012
TU96033 lncRNA upstream 774485 7889483 ~ 7894390 (+) True G76935
TU95949 lncRNA upstream 1016044 7651722 ~ 7652831 (+) True G76864
TU95947 lncRNA upstream 1018684 7649490 ~ 7650191 (+) True G76863
TU96169 lncRNA downstream 1617 8697678 ~ 8700117 (+) True G77049
TU96195 lncRNA downstream 112290 8808351 ~ 8808607 (+) True G77073
TU96266 lncRNA downstream 508281 9204342 ~ 9205423 (+) True G77126
TU96265 lncRNA downstream 509574 9205635 ~ 9208519 (+) True G77125
TU96276 lncRNA downstream 655530 9351591 ~ 9351870 (+) True G77135
AMCG00009990 mRNA upstream 238242 8404843 ~ 8430633 (+) True AMCG00009990
AMCG00009991 mRNA upstream 272907 8394952 ~ 8395968 (+) True AMCG00009991
AMCG00009988 mRNA upstream 358605 8270117 ~ 8310270 (+) True AMCG00009988
AMCG00009986 mRNA upstream 464742 8156818 ~ 8204133 (+) True AMCG00009986
AMCG00009983 mRNA upstream 549557 8118435 ~ 8119318 (+) True AMCG00009983
AMCG00009992 mRNA downstream 28231 8724292 ~ 8760028 (+) True AMCG00009992
AMCG00009995 mRNA downstream 73416 8769477 ~ 8776011 (+) True AMCG00009995
AMCG00009996 mRNA downstream 107949 8804010 ~ 8807887 (+) True AMCG00009996
AMCG00009997 mRNA downstream 281893 8977954 ~ 8978388 (+) True AMCG00009997
AMCG00009999 mRNA downstream 284694 8980755 ~ 8997868 (+) True AMCG00009999
TU94664 other upstream 7305041 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 7333825 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 7341311 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 7631433 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 7797140 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 2453565 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 3004645 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 6944900 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 7361470 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 8527821 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile