RNA id: AMCG00009995


Basic Information

Item Value
RNA id AMCG00009995
length 1991
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00009995
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 8769477 ~ 8776011 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGACCGACATTCATTCAACACCGCGGCCGTAAGAAGATCACTGTTCCTGCTGCCTGGTTCAATATTTCACTTCACTTTGCCTGCACCATGCTAAGGATGCTCCAGAAACAGCAGCTCCACCCGGGCATGCTTTTGATATCCATCTGGCTCAGTCATTTCATTGCAGATCACAGAGTACAGGctggtAACTGCTGGCTTCAGCAGGGGAAGAACGGAAGGTGCCAGGTCCTCTACATGTCTGGGATGAGCAGAGAGGAGTGCTGCAGGAGTGGCAGGCTGGGGACATCATGGACTGAGGAGGATGTGCCGAACAGCACGCTTTTCAGGTGGATGATCTTCAACGGAGGGGCCCCCAACTGTATACCATGCAAAGAATCGTGTGACAATGTGGACTGTGGCCCCGGGAAAAGGTGCAAAATGAACAAGAGGAACAAGCCGCGCTGCGTCTGCGCCCCCGACTGCTCCAATATGACCTGGAAAGGACCCGTCTGTGGCTCGGATGGAAAGACATACAGAGACGAGTGCGCTCTGCTGAAGGCCAGGTGTAAGGAGCAACCGGACCTGGAGGTGCAGTACCAGGGCAAATGCAAAAaagcaaaGTCATGTGATGATATCCAGTGCAGCACTGGGAAGAAGTGTCTTTGGGACGCGAGGATGAGCAGAGGGCGCTGTTCCCTGTGTGAGGAAGTTTGTCCAGAAAGCAGGTCGGACGAGGCAGTGTGTGCCAGTGATAACACCACTTATCCCAGCGAGTGTGCCATGAAGCAGGCAGCTTGCTCTTTGGGTGTTCTTCTGGAAGTTAAGCATTCTGGATCTTGCAACTCCATTACTGAAGaccaggaggaagaggaagacgaTGAAGACCAGGACTACATGGCTTATTTCCATTTATCTCCATTACTGGACGGGTAAACCACCATCACTAGTGGAACAGCCCTAGGGCAAGGAATCATGTCCATACTGTACATAAGtgtatgcttatttattttttaagaaaaaaggaaGTATACATATAGTTGAGTCTGCTAGAAGTTTATttatactgtgttgtgttttataatttatgcatttacaaTGTCTGGCTGACTATATACCATGTTATTTTGtactttcatttgtttttgtacttgttttctgttttgttttttgtggtttcctttctttttattttgaagaaatatatttgtccaaAGAGAAgcagtgttatttattgtgAGGTATGATGCTACCGTGTAAAGTATAATTCTTCTGCAAGCTGTAAATTGCATTCCTTGCGCTGTATAAATGCttattactgttgttttctgtatcACCGATGCTTGTTTCACACAAACTCGCATGTTagcctgtgtgtttatttattggaaatCTGTCATTCATTAATGTACATAAATGCTTCAGGTTTTGTTTACAACTCATTATAACTGACCAAAGGGTGTATTTCAATGGTTCTGCAAAAGTACACTATATGGTGCAGCACAGTAATGTAAAAGGAAGAGgcatttatttctcaaaaaaaaaaaaagccattgttTCCTCAAGTCTTGAAGGGGACTGAGGACTAACACAAACTAATAGGTTTGTTACTTGACCTTAAGTAGcagtatttgatattttaaagcttaaaaTATCAAACGTTTTTGAAAGATACTTGATTTTGTCATAATGTGCCATTACGTTTTTTTAGGTATCTTTGACTTGCATTCAACACCATCAAAGCTTTTTTAACCAGTTTATATTTTCACCATGGACTATGTACTGCGCCATAGTGCTCTTGCAGAGTTCACAGAATAAGATATACAGCGTGAATTAACATTATATCATACTGTATCACTTTGcttttctgacttttttttcaaaaatgcatttttttattttcaaacatgacaagttaaatacaaattcagttataaatatatagttttgtatttttttatgtaaatgtcaaatgtatataaaaagttATAATGGTATTTGTACAGATATGATGa

Function

GO:

id name namespace
GO:0043049 otic placode formation biological_process
GO:0048263 determination of dorsal identity biological_process
GO:0009994 oocyte differentiation biological_process
GO:0030901 midbrain development biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K04661 FST; follistatin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96169 lncRNA upstream 69360 8697678 ~ 8700117 (+) True G77049
TU96148 lncRNA upstream 330691 8438507 ~ 8438786 (+) True G77028
TU96132 lncRNA upstream 451802 8314116 ~ 8317675 (+) True G77012
TU96033 lncRNA upstream 875087 7889483 ~ 7894390 (+) True G76935
TU95949 lncRNA upstream 1116646 7651722 ~ 7652831 (+) True G76864
TU96195 lncRNA downstream 32340 8808351 ~ 8808607 (+) True G77073
TU96266 lncRNA downstream 428331 9204342 ~ 9205423 (+) True G77126
TU96265 lncRNA downstream 429624 9205635 ~ 9208519 (+) True G77125
TU96276 lncRNA downstream 575580 9351591 ~ 9351870 (+) True G77135
TU96341 lncRNA downstream 640419 9416430 ~ 9419370 (+) True G77192
AMCG00009992 mRNA upstream 9449 8724292 ~ 8760028 (+) True AMCG00009992
AMCG00009993 mRNA upstream 73416 8668875 ~ 8696061 (+) True AMCG00009993
AMCG00009990 mRNA upstream 338844 8404843 ~ 8430633 (+) True AMCG00009990
AMCG00009991 mRNA upstream 373509 8394952 ~ 8395968 (+) True AMCG00009991
AMCG00009988 mRNA upstream 459207 8270117 ~ 8310270 (+) True AMCG00009988
AMCG00009996 mRNA downstream 27999 8804010 ~ 8807887 (+) True AMCG00009996
AMCG00009997 mRNA downstream 201943 8977954 ~ 8978388 (+) True AMCG00009997
AMCG00009999 mRNA downstream 204744 8980755 ~ 8997868 (+) True AMCG00009999
AMCG00009998 mRNA downstream 282465 9058476 ~ 9069701 (+) True AMCG00009998
AMCG00010003 mRNA downstream 297230 9073241 ~ 9171648 (+) True AMCG00010003
TU94664 other upstream 7405643 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 7434427 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 7441913 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 7732035 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 7897742 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 2373615 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 2924695 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 6864950 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 7281520 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 8447871 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060767 True 2024 mRNA 0.42 6 NC_007116.7 40504919 ~ 40510397 (-)
grasscarp (Ctenopharyngodon idella) TU205962 True 1355 lncRNA 0.40 2 CI01000039 5198058 ~ 5200646 (-)