RNA id: AMCG00010006


Basic Information

Item Value
RNA id AMCG00010006
length 2397
RNA type mRNA
GC content 0.47
exon number 18
gene id AMCG00010006
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9392881 ~ 9414133 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAGTTAAAAGCTTCTCTCACATCCTTCCCCACAGGTCACCACATAAAATGGGGAATGGGTCAGTGAAGCCAAAACAGCTAAAGCAGCCAGAAGGGACTTTAGTAAACTTCTCCATTAATGGCAATGGCAACAAGTTATTCAGAGAGCAAGGGAGTGGCCTAAATGTCAAAGGTATGGCTGAAATCCTTGGTCTTAAAGTGGCAGACCTGGAAAGggaaagcaaaagaaaagatGAAGATCTTTGTGACAAGGACTACAAAATCAAAGGactccaggagcagcttgccaAGCAGACCAAGGTAATCTCTGAGCTGACAGAAGAACTCCAGAGCAAATGCATTCAGCTGAACAAGCTTCAAGACGTGATAAAAACCCACAGTGGACAGAGCCTCCATCCTTCTCCACTCAAAGTCAGGTTTAACCAGCATGTCAGTAGTTTGTTTAAGGATACTTTGAACAGGAGGAAGGGGGCAAAAGAAGGGGTGTCTGCAGAGCCCACCTCCAGAACATACAACTCCAGCAAACTGCCCAGGTTTTCCTTTGACAAAGTTCGAGTTCGGAAGGATTCAAGTGTGAAGAAGCTCATCACAGAAGCCCTGAATAAGAACCAGTTCCTGAAGAGACTGGAGCTGCAGCAAATCAAGGACATGGTGGAGTGCATGTACGAGAGAACCTACCACCAGGGGGATTACGTCATCAAGCAAGGGGAGCCAGGAAACCACTTATTTGTATTGGCAGATGGACAGCTGGATGTCTTTCAACAGAGCAAATTGTTAACAACAATATCTGTGTGGACGGCATTTGGTGAATTAGCAATATTATATAACTGCACCAGGACAGCGTCAGTTAAAGCGGTCAGCAATGTCCAGACATGGGCCCTGGACAGAGAGGTGTTCCAGAACATCATGAGAAGGACGGCGCAGGCCAGGCACGAGGAGTACAGGAACTTCCTCCGAAGTGTTTCTTTGCTGACCAACCTACCAGAAGAAAAACTGAATAAGATCGTAGACTGCTTAGAAGTGGAATATTATGACAAAGGGGATTATGTCatcagggagggagaggaaggaagCACTTTCTACGTTATAGCCAAAGGGAAGGTCAAAGTGACCCAGAGCACAGAAGAGCACACGGAGCCCGAAACCATAAAGTCTCTGCAGAGAGGGGACTACTTTGGAGAGAAAGCACTGATCAGCGATGATGTGAGGTCAGCCAACATAATTGCTGAAGAAGACGATGTGGAGTGCCTTGTTATTGACCGAGAGACATTTAATCAAACTGTGGGGACATTTGAGGAACTTCAGAAATATCTTCAAGGCTACGTGGCCAACCTCACCAGAGATGATGTGAAAAGACATGCTAAGAGGTCGACCTGTATGCGCTGGGCTCCGGCTCTGTCTTTGGAGCTGATCCAGCTGAAGGAGAAAGTTTCAGGTTTCTCTTCGAGCTCCCCGTTTGTGAACCTGGAGGTCATCGCCACTCTGGGAGTAGGAGGGTTTGGCAGAGTGGAACTGGTGAAAGTAAGGAATGAAGACATTACATTTGCAATGAAGTGCATCAAGAAAAAGCACATTGTTGACACTAAACAAGAGGAACATATCCATTCGGAGAGAAGGATTCTGGAAGAAACGTGCTCACCATTCATAGTGAAGCTCTACCGTACCTTTAAAGACAGCAAATATGTGTACATGTTACTGGAAGCTTGCCTCGGAGGGGAAATCTGGAGCCTCCTGCGGGACAGGGGGAGTTTTGATGAGCACACGGCGAAGTTCTGCATTGGCTGCGTGACTGAAGCATTTGACTACCTGCATCGCAGTGGGACAGTCTACAGGGACCTGAAACCTGAAAATCTCATGCTCGACTCGGAGGGATACGTTAAACTGGTGGACTTTGGTTTTGCCAAGAAGATTGGGTGTGGACAGAAGACATGGACTTTCTGCGGCACCCCAGAATATGTCGCTCCTGAGATCATTCTCAATAAGGGGCACGACTTTAGTGTGGACTTTTGGTCACTAGGAATCTTGGTGTTTGAGCTCCTTACGGGAAGCCCGCCATTTTCCGGAACAGATCAGATGATGACCTACAATTTAATTCTGAAAGGCATTGAAAAAATTGACTTTCCGAAAAAGGTAACACGGCGGCCTGAGGACTTGATAAGAAAACTGTGCAAACAAAATCCAACAGAACGTCTGGGAAATCTGAAGAATGGAATAACTGACATTAAGAAACACAGgtGGTTTACTGGCTTTAATTGGGAGGGACTAAAATCCAGGAATTTAATGTCCCCATTGAAAAGAGAGCTCAAAGGACCCACAGATCACAGCTACTTTGATAGCTACCCCCCGGATGATGAGAGTCCTCCAGAGGAGCTGTCGGGCTGGGATAATGACTTCTGA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0030553 cGMP binding molecular_function
GO:0004692 cGMP-dependent protein kinase activity molecular_function

KEGG:

id description
K19477 PRKG2; cGMP-dependent protein kinase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96276 lncRNA upstream 41011 9351591 ~ 9351870 (+) True G77135
TU96265 lncRNA upstream 184362 9205635 ~ 9208519 (+) True G77125
TU96266 lncRNA upstream 187458 9204342 ~ 9205423 (+) True G77126
TU96195 lncRNA upstream 584274 8808351 ~ 8808607 (+) True G77073
TU96169 lncRNA upstream 692764 8697678 ~ 8700117 (+) True G77049
TU96341 lncRNA downstream 2297 9416430 ~ 9419370 (+) True G77192
TU96347 lncRNA downstream 15110 9429243 ~ 9431629 (+) True G77198
TU96350 lncRNA downstream 103525 9517658 ~ 9518012 (+) True G77201
TU96357 lncRNA downstream 147176 9561309 ~ 9561806 (+) True G77207
TU96390 lncRNA downstream 327656 9741789 ~ 9743100 (+) True G77233
AMCG00010007 mRNA upstream 17137 9360116 ~ 9375744 (+) True AMCG00010007
AMCG00010005 mRNA upstream 42570 9347026 ~ 9350311 (+) True AMCG00010005
AMCG00010002 mRNA upstream 188782 9178039 ~ 9204099 (+) True AMCG00010002
AMCG00010003 mRNA upstream 221233 9073241 ~ 9171648 (+) True AMCG00010003
AMCG00009998 mRNA upstream 323180 9058476 ~ 9069701 (+) True AMCG00009998
AMCG00010012 mRNA downstream 258088 9672221 ~ 9688099 (+) True AMCG00010012
AMCG00010013 mRNA downstream 276440 9690573 ~ 9713280 (+) True AMCG00010013
AMCG00010014 mRNA downstream 499909 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010017 mRNA downstream 731420 10145553 ~ 10154362 (+) True AMCG00010017
AMCG00010020 mRNA downstream 877841 10291974 ~ 10299643 (+) True AMCG00010020
TU94664 other upstream 8029047 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8057831 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 8065317 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 8355439 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 8521146 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 1735493 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 2286573 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 6226828 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 6643398 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 7809749 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile