RNA id: AMCG00010007


Basic Information

Item Value
RNA id AMCG00010007
length 1398
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00010007
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9360116 ~ 9375744 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAATATGCCACAAACGCCACCTTTTGCGACCATGTTCACCACCAGTGGATATAATAGGAATCTCTACCAGACCAAGGAGGACAGCTATGGGGGCCTGTATTATCATGACAACAACCTTGTGTCAGGGTCTCTGGAGTCCCTTATCCAGCATTTAGTCCCCAATGTGGAGTACTATCCTGATAGAACGTATATATTTACTTTCCTGCTCAGCTCTCGGCTCTTTATCCACCCCTACGAGCTCATGGCCAAGGTGTGCCACTTCTGTGTTGAACAGCAGAGACTAAGCGACCCCGGGGCTGACAAGATCAGAATAAGGAAAATCGCCCCCAAGATCCTGCAGTTGCTGACAGAATGGACGGAAACCTTTCCCTATGACTTCAGAGATGAAAGAATGATGAGAAGTCTGAAGGAACTGACCCACAGATTCGCGAGTGGAGATGAGATTTACCGTAAGACTGTGCAGCAGATGATGCAGTCTCTCATCAGGAAGCTGGCCAGCCTAAGCCAATATGAAGAAGTGCTGGTGAAAATAAACGCTACGGTCACAGATAGGCTGACGGTGCTCAAGACCAAACCTCAGTCCATACAGAGGGACATTGTGACGATATGCAGTGACCCCTACACCTTAGCACAGCAGCTCACCCACATAGAGTTGGAGCGACTGAGTTATATAGGCCCTGAAGAATTTGTACAAGCGTTTGTGCAAAAAGACCCCCTGGACAATGACAAGagctGCTTCAGTGATCACAAGAAAACCAGCAACCTGGAAGCGTACGTCGAGTGGTTTAACAGGCTCAGCTATCTTGTTGCAACAGAAATCTGTATGCCCGTGAAGAAGAAGCACAGAGCCAGAGTCATCGAGTATTTCATCGATGTTGCTCGAGAATGTTTCAATATTGGCAACTTCAACTCTCTGATGGCCATTATATCTGGCATGAACATGAGTCCTGTCTCCCGGCTGAAGAAAACCTGGGGCAAAGTAAAGACGGCCAAGTTTGATATTCTCGAGCATCAAATGGATCCATCAAGTAATTTCTACAATTACCGGACTGCACTGCGCGGGGCGACGCAGAGGTCCTTAACAGCTCACAGCAGTAGAGAGAAGATTGTTATACCATTCTTCAGTTTATTAATCAAGGACATTTACTTCTTAAATGAGGGCTGTGCTAACCGACTCTCCAATGGACATGTCAATTTTGAAaaattctGGGAACTGGCCAAGCAGGTGAGCGAGTTCATGACATGGAAGCAGGTGGAGTGTCCCTTCGAGAGGGACCGCAAGATCCTCCAGTACCTCCTCACAGCGCCAGTCTTCAGTGAAGATGCGCTCTACTTGGCCTCTTACGAGAGTGAGGGTCCCGAGAACCACACCGAAAAGGACAGATGGAAGACTCTT

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96276 lncRNA upstream 8246 9351591 ~ 9351870 (+) True G77135
TU96265 lncRNA upstream 151597 9205635 ~ 9208519 (+) True G77125
TU96266 lncRNA upstream 154693 9204342 ~ 9205423 (+) True G77126
TU96195 lncRNA upstream 551509 8808351 ~ 8808607 (+) True G77073
TU96169 lncRNA upstream 659999 8697678 ~ 8700117 (+) True G77049
TU96341 lncRNA downstream 40686 9416430 ~ 9419370 (+) True G77192
TU96347 lncRNA downstream 53499 9429243 ~ 9431629 (+) True G77198
TU96350 lncRNA downstream 141914 9517658 ~ 9518012 (+) True G77201
TU96357 lncRNA downstream 185565 9561309 ~ 9561806 (+) True G77207
TU96390 lncRNA downstream 366045 9741789 ~ 9743100 (+) True G77233
AMCG00010005 mRNA upstream 9805 9347026 ~ 9350311 (+) True AMCG00010005
AMCG00010002 mRNA upstream 156017 9178039 ~ 9204099 (+) True AMCG00010002
AMCG00010003 mRNA upstream 188468 9073241 ~ 9171648 (+) True AMCG00010003
AMCG00009998 mRNA upstream 290415 9058476 ~ 9069701 (+) True AMCG00009998
AMCG00009999 mRNA upstream 362248 8980755 ~ 8997868 (+) True AMCG00009999
AMCG00010006 mRNA downstream 17137 9392881 ~ 9414133 (+) True AMCG00010006
AMCG00010012 mRNA downstream 296477 9672221 ~ 9688099 (+) True AMCG00010012
AMCG00010013 mRNA downstream 314829 9690573 ~ 9713280 (+) True AMCG00010013
AMCG00010014 mRNA downstream 538298 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010017 mRNA downstream 769809 10145553 ~ 10154362 (+) True AMCG00010017
TU94664 other upstream 7996282 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8025066 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 8032552 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 8322674 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 8488381 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 1773882 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 2324962 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 6265217 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 6681787 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 7848138 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile