RNA id: TCONS_00010916


Basic Information

Item Value
RNA id TCONS_00010916
length 1688
lncRNA type antisense_over
GC content 0.38
exon number 2
gene id XLOC_004675
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20263585 ~ 20265465 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACCCTATCCCCCTCTTTTCCTCCTTCTCCAGAGGGAAATCTCcagaactacctgatcttgtaCCCCTCGTCGTccaggtgggagccctgggctcaattatctcagaGCTTAGGGTTCTCTCTCGGGATAGCATGCTAAACCTGctaatattatcaagcaatatctaagtgagATCTCTTGAAAGTAAGTGTCACACTGTAAGTAATTTCTGCTGCATTAGATCAATTCCATTTAATTCTGACATCAAACTTTTAAATAGCAGAACTTTATATGCGCATTTGAGTTATCCTACCTCTTGATGGTCTGTGAGATGGAGGGTTTGCGCAGGACTGAGGGTCTGCGACAGCCGTTGATGTCAACTGGCGGGCATCTGAGCTGAATATTTTCAGTGGGCACACTGGCACTCCGCAGTGGGGATGTCCAGTCTGAGCCAGGGCGGCTTCTTTCTCTGCAGGCTGTCATTCCTGCTCTCATCCTCAGCATCGGCCATGTCTGCCGCCCCTCCCCTTACCAGCCAGCTGTAAGATCAAGCAGGGGCAAATAAGCACAAGTGAACAAATATGGGTGAAcaatacacccacacacacacaaaacagcaatGCCTTACATAAGACACACCACCATAATCCGTATTTCCATCTGGTTGTTGTGACATGATGGTCCAGTGCAGAGTTCAGTTACAGAAAAATGACAGACGCTTTTGTGCTCTTGGGACTCATAGCCGCTTTTTGCCATTAAATCACCCACTATGATTGCATATATAAGCAGTAATACAGTAATTCAGGATTTTCATGTGGTGAGAGGAATGTCACCTGCTGTCAAAACGAAGGTTTCATCCAATggccatttacatttttgttgaataTTTCAAGTTTTAGACCAAGAATTAATGTAGTAAGACTGTAATGTGTAGTAAGACATACAGTGCCTACTTGAATGCTTATTATTGCCTTATATATTGTGTCTTTATATTGTAAGAAACAGCAAAGGTGCATACttaattttatcttttaatattattgttttaaagggacagttcacccaaaaatgtaaaatctgtcataatttacttgccctttacttgtttctaaatctgtatgattttctttcttctgttgaacattaaataatatatttaagaaaaggctggaaacctgtaactgctgacttctattgtatttgttttgctactgtgaaagtcaatggttatggGTTTCagattttttctaaatatcttaattaaaaaaataagtacttAATCAAAACCTTTTTAATTTTGGGTTCACTATTTCCACTTGTCGGTGTAAACTATCATTTACTCGCTCTCATGTAAAGATctcaaaaagaagaaagaaactcacataGGTTTTAAACAAGGATAAATAAATGGAGGCAGAGTTTTAATTTTTTGGGAAACTATTACTTACGTTTGTTTTTTAATCTTCATTTCTGAATGAAAACTTCTTGATATTTTGCCCATAGGTCTCTGTTTGCTGTCATGTGactgaaaataaaaactataaattcATGATGGCCTATTAGTGTGATTTAGTTTCTTAAAAAATGAACTGTGACCAACTGTGTGCCCCAATGTCTCCAGCAGAGGATGCAAAGTCACCTATTAtccactgtttgtttatttaaagcagTATGCTGTGCTTAAGGAACTGCCTTTGCTCATTCCTTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010733 lncRNA upstream 804300 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00009244 lncRNA upstream 875207 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010732 lncRNA upstream 992429 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009224 lncRNA upstream 1122934 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010915 lncRNA upstream 1395610 18861278 ~ 18867975 (+) True XLOC_004648
TCONS_00009263 lncRNA downstream 78424 20343889 ~ 20346635 (+) False XLOC_004677
TCONS_00010917 lncRNA downstream 78434 20343899 ~ 20346635 (+) False XLOC_004677
TCONS_00010919 lncRNA downstream 226154 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00010918 lncRNA downstream 226154 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00010920 lncRNA downstream 226154 20491619 ~ 20504801 (+) False XLOC_004679
TCONS_00009258 mRNA upstream 106571 20149305 ~ 20157014 (+) False XLOC_004674
TCONS_00009260 mRNA upstream 107276 20149707 ~ 20156309 (+) True XLOC_004674
TCONS_00009259 mRNA upstream 113313 20149311 ~ 20150272 (+) False XLOC_004674
TCONS_00009254 mRNA upstream 114027 20122256 ~ 20149558 (+) False XLOC_004674
TCONS_00009255 mRNA upstream 115821 20122471 ~ 20147764 (+) False XLOC_004674
TCONS_00009261 mRNA downstream 70605 20336070 ~ 20337274 (+) True XLOC_004676
TCONS_00009262 mRNA downstream 76986 20342451 ~ 20353541 (+) False XLOC_004677
TCONS_00009264 mRNA downstream 86935 20352400 ~ 20353535 (+) True XLOC_004677
TCONS_00009266 mRNA downstream 146828 20412293 ~ 20482061 (+) False XLOC_004678
TCONS_00009265 mRNA downstream 146828 20412293 ~ 20482061 (+) False XLOC_004678
TCONS_00009249 other upstream 359170 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other upstream 366658 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009245 other upstream 875312 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009243 other upstream 878030 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009203 other upstream 1563963 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009270 other downstream 233518 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009286 other downstream 425893 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009295 other downstream 1171881 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009299 other downstream 1528537 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009304 other downstream 2178164 22443629 ~ 22444772 (+) True XLOC_004697

Expression Profile

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