RNA id: AMCG00010012



Basic Information


Item Value
RNA id AMCG00010012
length 795
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00010012
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9672221 ~ 9688099 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTGCTCCCATCCGCCAAACGTGCGCGTCCCTCTCCGCACTCGGCGCTGGTCTCGTCTGCAAAACTGTTGCGACTGTCGATTACAGTCATGAAGGACAGACGGGGAGAGGACGCGACACCCCGCAGCGGCGGTACCCCGGCCGCGGTCTTGTTTCTGGCTCTGTTCGTGGGATCCTCCTGCGGAGCCGAGGACGCGTCCTGCCACGGAGCCTTCGACCTCTACTTTGTACTGGACCGCTCTGGCAGCGTGGCAGAAAACTGGCCTGAAATTTATGGCTTCGTTAAGCAGCTCACGGACAGATTTGTGAGcCCAAGGATGAGATTATCTTTCATAGTTTTCTCATCAAGTGCTGAAGTCCTATTGCCTCTTACTGGGGACAGaaatgaaattgaaaaaggCCTGCAAAGATTAAGTGCAGTGAAGCCTGCAGGTGAAACATTTATGCATGATGGAATAACGAAGGCATTAGACCAAATACAAGCTCAAGGTTCGAGAACATCCAGCATTATTATTGCTTTGACGGATGGAAAGCTGGAGGGATTTCTGCTCACACTTGCACAAGATGAAGCTGAAAAGGCGAGGTCCGTCGGTGCACGAGTTTACTGTGTTGGTGTTAAAGATTTTGAAGAGTCAGAGcTTGAATCAATTGCTGACACCAAAGATCAAGTATTCCCTGTCACAGATGGCTTCCATGCCCTCAAAGGCATAATAAACTCTatttTAAAGCAGTCCTGCACAGAAATTTTAACCGTTGAGCCTTCAGCCATCTGTGTTAACGTCTGCCTCCATTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU96357 lncRNA upstream 110415 9561309 ~ 9561806 (+) True G77207
TU96350 lncRNA upstream 154209 9517658 ~ 9518012 (+) True G77201
TU96347 lncRNA upstream 240592 9429243 ~ 9431629 (+) True G77198
TU96341 lncRNA upstream 252851 9416430 ~ 9419370 (+) True G77192
TU96276 lncRNA upstream 320351 9351591 ~ 9351870 (+) True G77135
TU96390 lncRNA downstream 53690 9741789 ~ 9743100 (+) True G77233
TU96413 lncRNA downstream 186769 9874868 ~ 9940435 (+) True G77253
TU96416 lncRNA downstream 234622 9922721 ~ 9926110 (+) True G77255
TU96453 lncRNA downstream 308255 9996354 ~ 9997885 (+) True G77285
TU96516 lncRNA downstream 615096 10303195 ~ 10305242 (+) False AMCG00010021
AMCG00010006 mRNA upstream 258088 9392881 ~ 9414133 (+) True AMCG00010006
AMCG00010007 mRNA upstream 296477 9360116 ~ 9375744 (+) True AMCG00010007
AMCG00010005 mRNA upstream 321910 9347026 ~ 9350311 (+) True AMCG00010005
AMCG00010002 mRNA upstream 468122 9178039 ~ 9204099 (+) True AMCG00010002
AMCG00010003 mRNA upstream 500573 9073241 ~ 9171648 (+) True AMCG00010003
AMCG00010013 mRNA downstream 2474 9690573 ~ 9713280 (+) True AMCG00010013
AMCG00010014 mRNA downstream 225943 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010017 mRNA downstream 457454 10145553 ~ 10154362 (+) True AMCG00010017
AMCG00010020 mRNA downstream 603875 10291974 ~ 10299643 (+) True AMCG00010020
AMCG00010021 mRNA downstream 614827 10302926 ~ 10313486 (+) True AMCG00010021
TU94664 other upstream 8308387 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8337171 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 8344657 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 8634779 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 8800486 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 1461527 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 2012607 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 5952862 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 6369432 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 7535783 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile