RNA id: AMCG00010013


Basic Information

Item Value
RNA id AMCG00010013
length 732
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00010013
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 9690573 ~ 9713280 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAATGGATTCATTGTGCAGCATCATCTGGAATGACAGCTGCCGGGGGAAGAGCATTGGCATTCCTCACATCCAGtctgACGGTACAGCTGTGGCCATTGTGTTCCTGGTGCTGTTCCTCCTGCTTGCACTGCTGCTCATGTGGTGGTTTTGGCCCCTGTGCTGTACCCTGgtgATTAAAGACCCACCCCCACCTCCGCCACCAGCTCCAATACCGGAACCAGAAGAGGACCCATTGCCTAAGAAAAAGTGGCCCACTGTGGATGCTTCTTACTATGGGGGAAGAGGAGCTGGTGGTATAAAGAGAATGGAGGTTCGCTGGGGTGAAAAGGGATCCACCGAAGAAGGGGCGAGATTAGAGAAAGCCAAGAATGCTGTAGTGCATGTACCGGAAGATGTGGAAGAGCCAATGACACGCAAATCTCCAAGAGCTGCCCCCGTCCACCAGCCATCTGAATCAAAATGGTACACCCCTATTAAGGGCCGTCTGGATGCTCTGTGGGCACTGCTGCGGAGGCAGTATGATCGAGTTTCCCTCATGCGACCACAGGCGGAAGATGAGACGGGGGAGCGAGAGAGGCACTTCAGAGCCAACTTAACGCGGCAACATCTGCCGCCAAGTTTCCAGGGAGCGGCTGGGGACAGCAGGAGTGTAAACCAGCCTGTGTACACTGCGTCCTCGTCCTGGGGCTTACTGGACAAACTGTGCCGCCTGAGACAGAAAAAATAG

Function

GO:

id name namespace
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0005768 endosome cellular_component
GO:0030496 midbody cellular_component
GO:0005886 plasma membrane cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0070938 contractile ring cellular_component
GO:0030864 cortical actin cytoskeleton cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96357 lncRNA upstream 128767 9561309 ~ 9561806 (+) True G77207
TU96350 lncRNA upstream 172561 9517658 ~ 9518012 (+) True G77201
TU96347 lncRNA upstream 258944 9429243 ~ 9431629 (+) True G77198
TU96341 lncRNA upstream 271203 9416430 ~ 9419370 (+) True G77192
TU96276 lncRNA upstream 338703 9351591 ~ 9351870 (+) True G77135
TU96390 lncRNA downstream 28509 9741789 ~ 9743100 (+) True G77233
TU96413 lncRNA downstream 161588 9874868 ~ 9940435 (+) True G77253
TU96416 lncRNA downstream 209441 9922721 ~ 9926110 (+) True G77255
TU96453 lncRNA downstream 283074 9996354 ~ 9997885 (+) True G77285
TU96516 lncRNA downstream 589915 10303195 ~ 10305242 (+) False AMCG00010021
AMCG00010012 mRNA upstream 2474 9672221 ~ 9688099 (+) True AMCG00010012
AMCG00010006 mRNA upstream 276440 9392881 ~ 9414133 (+) True AMCG00010006
AMCG00010007 mRNA upstream 314829 9360116 ~ 9375744 (+) True AMCG00010007
AMCG00010005 mRNA upstream 340262 9347026 ~ 9350311 (+) True AMCG00010005
AMCG00010002 mRNA upstream 486474 9178039 ~ 9204099 (+) True AMCG00010002
AMCG00010014 mRNA downstream 200762 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010017 mRNA downstream 432273 10145553 ~ 10154362 (+) True AMCG00010017
AMCG00010020 mRNA downstream 578694 10291974 ~ 10299643 (+) True AMCG00010020
AMCG00010021 mRNA downstream 589646 10302926 ~ 10313486 (+) True AMCG00010021
AMCG00010025 mRNA downstream 619940 10333220 ~ 10359574 (+) True AMCG00010025
TU94664 other upstream 8326739 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8355523 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 8363009 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 8653131 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 8818838 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 1436346 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 1987426 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 5927681 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 6344251 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 7510602 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00060748 True 5216 mRNA 0.40 17 NC_007116.7 39386225 ~ 39474235 (-)