RNA id: AMCG00010017


Basic Information

Item Value
RNA id AMCG00010017
length 3433
RNA type mRNA
GC content 0.41
exon number 9
gene id AMCG00010017
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 10145553 ~ 10154362 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGCAATTGCTCTGAAATTTGGGGACTGAGTACACCAAATACGATAGATCAGTGGGATACCTCAGGCCATTACAGCTACCCTGACCAAACCAGGTCTCTCGATGGCCGTCTGCAAGTGTCTCATCGTAAAGGCTTACCGCACGTTATCTACTGTCGGTTGTGGAGGTGGCCAGACCTGCACAGTCACCATGAGCTGCGAGCGATCGAGACCTGTGAATATGCGTTTAACCTTAAGAAGGACGAAGTGTGCGTCAACCCGTACCATTACCAAAGGGTTGAAACGCCAGttttgccACCTGTCCTCGTGCCAAGACACTCAGAGATTCTAACAGAGTTGCCTCCACTGGACGATTACACTCATTCCATCCCCGAAAACACAAACTTTCCTGCAGGAATTGATCCACCAAATAATTATATACCAGAAACACCACCACCTGGATACATCAGTGAAGATGGGGAGACGAGCGATCAGCAAATGAATCAAAGTATGGACACAGGTTctccagcagaactgtcacCAAGCACGCTTtcacctgtcaatcacagcaTGGATCTTCAGCCTGTCACATACTCGGAACCAGCCTTTTGGTGTTCAATAGCATATTATGAATTAAATCAGCGAGTTGGAGAAACTTTCCACGCATCCCAGCCCTCTTTGACAGTAGATGGGTTTACAGATCCGTCAAACTCTGAAAGATTTTGTCTGGGTTTGCTCTCCAACGTAAACAGAAACGCGACTGTTGAAATGACCAGAAGACACATAGGGAGAGGCGTGAGGCTGTACTACATCGGCGGTGAAGTTTTTGCGGAGTGCCTGAGTGACAGCGCTATATTTGTTCAAAGTCCAAACTGCAACCAGAGATACGGATGGCATCCCGCAACAGTCTGTAAAATTCCACCAGGATGTAATCTAAAGATCTTCAACAATCAGGAATTTGCTGCACTACTTGCTCAGTCAGTCAACCAGGGCTTTGAAGCAGTTTACCAGTTAACCAGGATGTGCACTATCAGAATGAGCTTCGTGAAAGGCTGGGGTGCAGAGTACAGACGGCAGACTGTAACAAGCACTCCCTGCTGGATTGAGCTGCACTTGAACGGACCCCTCCAATGGCTGGATAAAGTGCTGACACAGATGGGCTCCCCGTCAGTGCGCTGCTCCAGCATGTCGTAATGGCCTCCCCAGGACAGGGACAAACACCATGGAGTCCACgaataaaagaaaggaaaacaaagactGGCTCTAACATGTCTTTCATAGTACTTGCGACCCCACAGACTTTCActgttaaaaacagaaatggcacTTGATGTCCCATCAGCTTAATGCACCTTGTTTAATTCTTTCCCCAATACCttgaatattaaatgtattagtcTTAGAAATCCAATATATCTTGACTTTAGAAGTATGGGGATGGATTGTAggtgggtggggaggggggagtaATATGGGAAGACGTTTAATACTTGGCATAGCATTACTTTTTTGAGTTTTGGGTTTtttactttagatttttttttttttagtttcattttcagGATTTTGGCCAGATAAGATGACATTTTGATGGTCATTTGTGATGACTTCTTTAAGAGAGAGTTTGAATATTGtaactgtcattttaattagctgtaccaagtttttttgttttcttttttttttttttgtttccactcctagcaaaacaaaagaggaaaataatgatttagATAATTTATGAAACAAAAGTATTGTGGCCACAAAGATTGTGTTTTGACAAGAATGCCAAATGACGAGGCGCGGATCTCTTGAGGAtttcctttctcttcctcttctccccACTACTAGAGAATGTTGCCTTTAATTCCTGAGGTGTGCTGTTATAAGACATGCTTCTTTTAACCTTCGGAGAACAGATAGGAATGTCGTAAGTGACCGAGCGCAGGTTTTCGCTGAGACTAGGTGCGTCGTGGGTGGACACTGCAGCCGCTCTGGTACCGGGTGGCGAGTATCCCTCTGCACGGCCGGGTCACACACAGCTGCGGTGTCTGGCTTGGTTACAGGATGTTCACCAGATGACCTCCGTGTCCTTACCATGTCCGGTTCTTTTCAAACTAAGTATTTCAATCAAATCATGAAGGGTAGGTGTACCCCCAAATGCTGTAAGTGAGCTTCAGGTATATCTACATTggcaagattttatttttttatttttctctccagctacttttctttttgtattgtcatgtatttttatatacctttttttattattctatagctcacttcctttttaataaaattaacatttttagacCACATCCTGTTTTTGAAGGAATGGAGCTTATCAGTGTGAGAGTCCAGTagcaaaataattatgtaaGCATGAATCATCCTCAGATATGGCTACTTGTTGGTTTTCTCACAGATTTACAGTTTGGTTCCTGTAGCACAAGAGATGCTGCCCGAATCGACACTTCCCCCCATAACTCTGAAAACCTAATAACCTTTTTTGAAAGAATTTGCGCAGAGtgagtttttgtttggttttaaaaatatatatattgaagagGTGCAATAAAAGTCTTTCATAATTAGTACTTTAAATGCCTTTAACCTGAGCTTTCCTTTTCCGTAATAGGAgaactttaaaaaagaaaaaaaaaaaaaaatcctgggTCATGTTGCCTATGAAGTATGTTGTTACAGAACTGTGATAATTTGGCAATTAAAGAGAATCGTTCCATAATCTTCACACAGTACATTGTTGAAGTCTTGGGTGCCGAGtgggggaaggagggagggagggaggatcTGAGCAGTGTTCAACCAGCTTGCATCAGGGAGGGAGAAATGAGACTGCAGAACAGGGGGGGAGGGCAATTATGTaacttctgtatatatatatatatatttaaaaaattctTATGTACAACTTACTAACGACTCTGTGATCTAGCTGTCTGTCATTCTTTACTTGTTGTGGCAGTAGCaagatttttaaatgtctttccttTTCTCCCCTCTTCCTTTTCATTGTTGATTCCTATCTTATTACACTAGCAATTGTACTTTGTAAGTGCAACTAGTGATTAGCTTTGAGAACAAAAATGTGGCCAGTGTTATAGCTTTGAATTGGCAGAGGCCATGGAGGCCGAGTGAGGAGAATGTTCTGCTTGCCATAAAGGTTTGTTGGGTGTTGAATCGATACCAAATAGAAATGAAAATGGGCAGACTaagatatatgtatacatatataatgcatatatatatatatatatataatatgcattttattttatattttggcaAAGCATTTAACAGTTGGTGAGCTTGTTTTACCAGTAGATGGATGTATTGGTAGAACATGTGAACTTCAGACGATAAGCTTTCAGGCGTGTTGCATATGCAGACTTCATAAATACACTAATAAAGGTTTTAATTCTCATGA

Function

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0060282 positive regulation of oocyte development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K04500 SMAD2; mothers against decapentaplegic homolog 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96453 lncRNA upstream 147668 9996354 ~ 9997885 (+) True G77285
TU96413 lncRNA upstream 205118 9874868 ~ 9940435 (+) True G77253
TU96416 lncRNA upstream 219443 9922721 ~ 9926110 (+) True G77255
TU96390 lncRNA upstream 402453 9741789 ~ 9743100 (+) True G77233
TU96357 lncRNA upstream 583747 9561309 ~ 9561806 (+) True G77207
TU96516 lncRNA downstream 148833 10303195 ~ 10305242 (+) False AMCG00010021
TU96526 lncRNA downstream 160984 10315346 ~ 10316098 (+) True G77346
TU96533 lncRNA downstream 176358 10330720 ~ 10332498 (+) True G77349
TU96593 lncRNA downstream 823301 10977663 ~ 10978504 (+) True G77395
TU96648 lncRNA downstream 1200729 11355091 ~ 11355362 (+) True G77445
AMCG00010014 mRNA upstream 226382 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010013 mRNA upstream 432273 9690573 ~ 9713280 (+) True AMCG00010013
AMCG00010012 mRNA upstream 457454 9672221 ~ 9688099 (+) True AMCG00010012
AMCG00010006 mRNA upstream 731420 9392881 ~ 9414133 (+) True AMCG00010006
AMCG00010007 mRNA upstream 769809 9360116 ~ 9375744 (+) True AMCG00010007
AMCG00010020 mRNA downstream 137612 10291974 ~ 10299643 (+) True AMCG00010020
AMCG00010021 mRNA downstream 148564 10302926 ~ 10313486 (+) True AMCG00010021
AMCG00010025 mRNA downstream 178858 10333220 ~ 10359574 (+) True AMCG00010025
AMCG00010027 mRNA downstream 257344 10411706 ~ 10412110 (+) True AMCG00010027
AMCG00010026 mRNA downstream 599430 10753792 ~ 10754548 (+) True AMCG00010026
TU94664 other upstream 8781719 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8810503 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 8817989 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 9108111 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 9273818 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 995264 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 1546344 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 5486599 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 5903169 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 7069520 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00004933 False 1416 mRNA 0.54 10 NC_007121.7 14873184 ~ 14920989 (-)
grasscarp (Ctenopharyngodon idella) CI01000304_04144667_04151439.mRNA True 3597 mRNA 0.41 8 CI01000304 4144460 ~ 4153533 (-)