RNA id: AMCG00010020


Basic Information

Item Value
RNA id AMCG00010020
length 2127
RNA type mRNA
GC content 0.54
exon number 6
gene id AMCG00010020
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 10291974 ~ 10299643 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAAAGACTCCACTTCCTGGACCTAACGATATCGTAATGACCACACCACCCAACACCTACCAACAAGAGCCCGTCACCCCGCCTAGAGGCAACTCCTCCTCTCTGAAGCCCAACCAGGTCGGCCAGGTCGTGCTGTACGGGGTTCCCATCGTCTCCCTGGTGATCGACGGCCAGGAGAGGCTGTGCCTGGCGCAGATATCCAACACCCTGCTGAAGAACTACAGTTACAATGAAATCCACAACCGACGGGTAGCCCTGGGCATCACTTGTGTGCAGTGCACCCCTGTGCAGCTGGAGATCCTGCGGCGGGCCGGGGCCATGCCCATATCTTCCAGAAGGTGTGGCATGATCACCAAAAGGGAAGCCGAAAGACTCTGCAAGTCCTTCCTTGGGGAGAACTCGCCTCCTAAGCTTCCCGACaactttgcttttgatgtgACACATGAATGTGCATGGGGCTGCAGGGGGAACTTTGTCCCAGCCCGTTACAACAGCTCCAGAGCGAAATGCATTAAATGCTGCTACTGTAACATGTACTTTTCCCCCAACAAGTTCATTTTCCATTCCCACCGCACCCCAGAGGCAAAGTACACCCAGCCCGATGCTGCCAATTTCAACTCTTGGCGGCGCCACCTCAAACTCACTGATAAAACCCCACCAGATGACCTAGCCTTCGCGTGGGAGGACGTGAAAGCCATGTTCAACGGGGGGAGTCGCAAAAGAGCCCTTCCACAGGGTCACTGCTCCTCTCTGGGGCAGGTCAAGGCAGTTAACACTGTTCTCCCGCACATGATCTCCCCAGACCTGACCCAGAAGAGAGCGAGATTCGAGGAGGACGAAGACGTTGATGGAACGAGCTTGTCCCCCCGGAAGAATCCGCGCAGCTACCCTGTCATTCCAGTACCAAGCAAGAGCTTCGGCATGTTGCAGAAATTCCCCGCTACCTCGCTGTTCCCTAACCCATACACTTTCCCGGCTTTCAGCCTGTGTCAAAAAAAGGAGGACGGTGAGCCGGCAAATGGACAAAAAACAAGTGGACTTTCTGGCCTCCTTTGGCCAGGTAGAAAAGATGCTTTCTACCCTCCCTTTTGCATGTTCTGGCCTCCAAGGACAACAGGCGGCATCCCGGTACCCACCTACCTCCAGCCTCAGCCCAATGCCCTCACCTCGCTCACGGAAAACCCAACGCTGCGACAAGCCTTCCTTGACCTTTCGGAGCAGAGCGAGAGCAGCGCCTTGGCCAATCCCAGGGCAGGGCTGTTTGACAGTGACTGTACATCGGCGACCAACGATCTCAGGCCGGCCCAAGACGCGCGGCTCAAAATTATGGAAGCGCCTTCGTTCCCGACCAGGAAGGCCAGCTACCATTCTGCATTCCGACCTGTGGTGAAAGACGCCGAGAGCATCGCCAAGCTGCATGGAAACATGGAGGAATTCGGCTCTGATCGGCACCTTTCTCCAGGGACCAGCTGCAGTTACCAAAGCGAGAGTGGCGACAGCGATGAGGAGCAGGAGGTCGACGTAGAAACCAAACAAGACGAGGAAGAGGAAGACTTCAGCGCCAGGCAATGCGTCCAGCTCAGGGGGCTCACAGAAAACACGGAGCAGAGGAATAAAGACAGGGTGCATTTCCCCAGTATGGGCACGGATTCCACGGAGGAAAAAAACGGCCTCTCAGCCAGTTCACCTGCCAGTCTAAAAGACTCCAGCCCGATTCACGCCTCACTGGAGGAGTCAAACTACAAAGATGGACACAAAAACAGAGGTGACGGACAGACAGCTTTTGCTACCAAAGAAAATATCAGCCTTTCAGacGAAAACAAAGAACAGAGCAACTTCTTTGTTTCCGAAACGGACACATCTGGTCCTGAGTACTGGAGAGAGACTGCAGGTGATCAGAGCCAAGAACCAAACCCACCTGCAACTCTAAAGAAGGATGTGGAAAATATGGAAAAAGAAGAACTCCAGAAAGTGCTGTTAGAACAGATCGATTTGCGAAGACGGTTGGAACAGGAGTTTCACGCGCTTAAGGGCAATTCTACATTTCCAGTGTTCCATAACTTCCAAGACCAAATGAAGAGAGAGCTGGCATACAGAGAGGAGATGGTCCAGCAGCTGCAAATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96453 lncRNA upstream 294089 9996354 ~ 9997885 (+) True G77285
TU96413 lncRNA upstream 351539 9874868 ~ 9940435 (+) True G77253
TU96416 lncRNA upstream 365864 9922721 ~ 9926110 (+) True G77255
TU96390 lncRNA upstream 548874 9741789 ~ 9743100 (+) True G77233
TU96357 lncRNA upstream 730168 9561309 ~ 9561806 (+) True G77207
TU96516 lncRNA downstream 3552 10303195 ~ 10305242 (+) False AMCG00010021
TU96526 lncRNA downstream 15703 10315346 ~ 10316098 (+) True G77346
TU96533 lncRNA downstream 31077 10330720 ~ 10332498 (+) True G77349
TU96593 lncRNA downstream 678020 10977663 ~ 10978504 (+) True G77395
TU96648 lncRNA downstream 1055448 11355091 ~ 11355362 (+) True G77445
AMCG00010017 mRNA upstream 137612 10145553 ~ 10154362 (+) True AMCG00010017
AMCG00010014 mRNA upstream 372803 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010013 mRNA upstream 578694 9690573 ~ 9713280 (+) True AMCG00010013
AMCG00010012 mRNA upstream 603875 9672221 ~ 9688099 (+) True AMCG00010012
AMCG00010006 mRNA upstream 877841 9392881 ~ 9414133 (+) True AMCG00010006
AMCG00010021 mRNA downstream 3283 10302926 ~ 10313486 (+) True AMCG00010021
AMCG00010025 mRNA downstream 33577 10333220 ~ 10359574 (+) True AMCG00010025
AMCG00010027 mRNA downstream 112063 10411706 ~ 10412110 (+) True AMCG00010027
AMCG00010026 mRNA downstream 454149 10753792 ~ 10754548 (+) True AMCG00010026
AMCG00010024 mRNA downstream 494289 10793932 ~ 10798679 (+) True AMCG00010024
TU94664 other upstream 8928140 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8956924 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 8964410 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 9254532 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 9420239 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 849983 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 1401063 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 5341318 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 5757888 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 6924239 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile