RNA id: TU96516


Basic Information

Item Value
RNA id TU96516
length 1454
lncRNA type sense_over
GC content 0.41
exon number 3
gene id AMCG00010021
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 10302926 ~ 10313486 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATACGAACACGTCAGACAGAAGAAGACGGTGCCAGCATGGCGTTTACTCTCTATTCCTTGATTCAGGCAGCGattttgtgtgtaaatgcaGTCGCTGTGTTGCACGAAGAGCGGTTCCTCAGCAAAAtTGGCTGGGGTGCAGATCAAGGCATTGGTGGCTTTGGTGACGAGCCAGGAGTTAAGTCCCAGCTGATGAACCTGGTTCGCTCTGTGAGGACAGTGATGAGAGTGCCCTTAATCATCGTGAACGCagtgtgtattgtattgctgctgctgttcggATAAAGAAGACCCTGAAGAGGGTGGATAACATGTTGGACTGAATTCAAAGACAAAATATGGACTACCTTCATCATCCCAGGATATAGATTTTAGTTCTGTGTCACCCCACagacttgttgttgttgttgttgttgttgttggttacGATTCCTTAcgtttttttatatgtttaaacGCCAGCTGAGAGCGCTGTTCAAACCTCTTTTTATAAAcccataaacaaacaaacaaacgctCTTGGATGTGGATTTGGCAGTAACCATGTCACACTTGTCGCGTTGACCATTTTTCTAAACTGTAGGgaggaaaaagcaaaaataaaggCATGAATGTGATCACAACTTGCTGGCTCAGTCGTTGAGTGGACAAACAGCTTAGCACTTCATCTTGTATGGTGTTACCCATGTTTCAAGCAGCATTTGGATTTCACTTTCCTCTGAAAATCAGTCCTGCCACTATAATCCCACCGGCTTTGACACAGATTTCCATCGCGGCTGTGAAGAAAGCACTCGGAGACCCGTTTTCTCATTTAACTTTTTGTTGATAGGCAGAGGGCTTCCTGAGACACTTAAATATGTCATCTTGCTCCTTGGCTAATAAAACACTGTAAGAGTTTCAGATGcggagaacaaaaacaaagccaattTCTACAAGCACTCCAAGTCCCCAGTTGTCAAGAAACATCAGATTTGGCATTATGGTTTTATGcttttgtcaatattttcatttaaagtcaGGGGTAACTTATTCTCCATGAgcaaaattttaaataaaaacatcacgGTGAGCAAATCCCTCCTAGATTTGTGGTTAAGATTGAAAGCACaagtgtaatgttttattatcttGTCACACCGCTCTTGGGGATAGTCGATGCTACAGTAAATACCCTTGCAAATTGTCTGCTTCTGGGCACATCTTTGTGATATATTTACTTGAAATATGGAAGGGGAATATAGTGGCTTAAACAAGGAGCTATcttataatgtaaaaaaattgcAGTGTATGTACTTAGTCCCAAAGGAAATTAAGGTGGGGTTGGGAGGGGGGTGATGTcttttgcagcttttttttttctttaaggttTCATATCATTCCTTCCCTGCTTCAGTGTTGGGGTGTTTAGCTaaaatttcagtgtttttaataaaatacatcaatttcCTCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96453 lncRNA upstream 305310 9996354 ~ 9997885 (+) True G77285
TU96413 lncRNA upstream 362760 9874868 ~ 9940435 (+) True G77253
TU96416 lncRNA upstream 377085 9922721 ~ 9926110 (+) True G77255
TU96390 lncRNA upstream 560095 9741789 ~ 9743100 (+) True G77233
TU96357 lncRNA upstream 741389 9561309 ~ 9561806 (+) True G77207
TU96526 lncRNA downstream 10104 10315346 ~ 10316098 (+) True G77346
TU96533 lncRNA downstream 25478 10330720 ~ 10332498 (+) True G77349
TU96593 lncRNA downstream 672421 10977663 ~ 10978504 (+) True G77395
TU96648 lncRNA downstream 1049849 11355091 ~ 11355362 (+) True G77445
TU96652 lncRNA downstream 1079155 11384397 ~ 11387199 (+) True AMCG00010041
AMCG00010020 mRNA upstream 3552 10291974 ~ 10299643 (+) True AMCG00010020
AMCG00010017 mRNA upstream 148833 10145553 ~ 10154362 (+) True AMCG00010017
AMCG00010014 mRNA upstream 384024 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010013 mRNA upstream 589915 9690573 ~ 9713280 (+) True AMCG00010013
AMCG00010012 mRNA upstream 615096 9672221 ~ 9688099 (+) True AMCG00010012
AMCG00010025 mRNA downstream 27978 10333220 ~ 10359574 (+) True AMCG00010025
AMCG00010027 mRNA downstream 106464 10411706 ~ 10412110 (+) True AMCG00010027
AMCG00010026 mRNA downstream 448550 10753792 ~ 10754548 (+) True AMCG00010026
AMCG00010024 mRNA downstream 488690 10793932 ~ 10798679 (+) True AMCG00010024
AMCG00010028 mRNA downstream 588967 10894209 ~ 10909942 (+) True AMCG00010028
TU94664 other upstream 8939361 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8968145 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 8975631 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 9265753 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 9431460 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 844384 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 1395464 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 5335719 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 5752289 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 6918640 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1124984 True 788 lncRNA 0.40 3 NC_048575.1 49279403 ~ 49283794 (+)
eurasian perch (Perca fluviatilis) TU80345 False 683 lncRNA 0.41 3 NC_053117.1 7574730 ~ 7576127 (+)
bowfin (Amia calva) TU80345 True 791 TUCP 0.40 4 CM030127.1 25111110 ~ 25112551 (-)