RNA id: AMCG00010025


Basic Information

Item Value
RNA id AMCG00010025
length 639
RNA type mRNA
GC content 0.53
exon number 8
gene id AMCG00010025
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 10333220 ~ 10359574 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAACGAAGAAAAAGCGCACCGATTTTGATACTGCAGAGCACCAGCACCTGCGCTATAACCCTCTGAGAGACTCTTGGGTCCTGGTCTCTGCTCACAGGATGAAGAGACCTTGGAAGGGTCAGGTGGAGAAGCCCCCAGCGGACGAGATCCCACGACAGGACCCCTCCAACCCCCTCTGCCCTGGCAATACAAGGGCAAATGGGGAGGTTAACCCTGACTATGACAGCACTTTCCTGTTTGATAATGACTTCCCAGCCCTACAGCCTAATGCTCCAGAGCCAGGAACCAGTGACCATCCATTGTTTCAGACAAAAGGTGCCAGAGTGATGTGTTTCCACCCCTGGTCTGATATCACCCTGCCACTGATGAAGATGTGTGAGATCAAGACAGTGATTGATAAATGGGCTGAGTTAATAGAGGACCTGGGGGCCACATACCCCTGGGTGCAGATCTTTGAGAATAAGGGGGATATGATGGGCTGCTCCAATCCACACCCACACTGCCAAGTGTGGGCCAGCAACTTCCTCCCCAATGAGCCAAGTCTATCAGACCGCTGCCAGCGAGAGTACTACAAGAAGCATGGAGTGCCTTTGCTACTGGACTATGCCACACAGGAGGCCCAAAGACAGGCATGA

Function

GO:

id name namespace
GO:0006012 galactose metabolic process biological_process
GO:0008108 UDP-glucose molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K00965 galT, GALT; UDPglucose--hexose-1-phosphate uridylyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96533 lncRNA upstream 722 10330720 ~ 10332498 (+) True G77349
TU96526 lncRNA upstream 17122 10315346 ~ 10316098 (+) True G77346
TU96516 lncRNA upstream 27978 10303195 ~ 10305242 (+) False AMCG00010021
TU96453 lncRNA upstream 335335 9996354 ~ 9997885 (+) True G77285
TU96413 lncRNA upstream 392785 9874868 ~ 9940435 (+) True G77253
TU96593 lncRNA downstream 618089 10977663 ~ 10978504 (+) True G77395
TU96648 lncRNA downstream 995517 11355091 ~ 11355362 (+) True G77445
TU96652 lncRNA downstream 1024823 11384397 ~ 11387199 (+) True AMCG00010041
TU96744 lncRNA downstream 1225380 11584954 ~ 11586100 (+) True G77517
TU96742 lncRNA downstream 1231644 11591218 ~ 11639790 (+) True G77515
AMCG00010021 mRNA upstream 19734 10302926 ~ 10313486 (+) True AMCG00010021
AMCG00010020 mRNA upstream 33577 10291974 ~ 10299643 (+) True AMCG00010020
AMCG00010017 mRNA upstream 178858 10145553 ~ 10154362 (+) True AMCG00010017
AMCG00010014 mRNA upstream 414049 9914042 ~ 9919171 (+) True AMCG00010014
AMCG00010013 mRNA upstream 619940 9690573 ~ 9713280 (+) True AMCG00010013
AMCG00010027 mRNA downstream 52132 10411706 ~ 10412110 (+) True AMCG00010027
AMCG00010026 mRNA downstream 394218 10753792 ~ 10754548 (+) True AMCG00010026
AMCG00010024 mRNA downstream 434358 10793932 ~ 10798679 (+) True AMCG00010024
AMCG00010028 mRNA downstream 534635 10894209 ~ 10909942 (+) True AMCG00010028
AMCG00010034 mRNA downstream 725106 11084680 ~ 11085921 (+) True AMCG00010034
TU94664 other upstream 8969386 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 8998170 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 9005656 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 9295778 1037206 ~ 1037442 (+) True G75745
TU94510 other upstream 9461485 867680 ~ 871735 (+) False AMCG00009821
TU96625 other downstream 790052 11149626 ~ 11155469 (+) True G77423
TU96770 other downstream 1341132 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 5281387 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 5697957 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 6864308 17223882 ~ 17225340 (+) False AMCG00010164

Expression Profile