RNA id: AMCG00010041


Basic Information

Item Value
RNA id AMCG00010041
length 1881
RNA type mRNA
GC content 0.50
exon number 14
gene id AMCG00010041
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11289903 ~ 11389245 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGAAATGGATACTGACAAAGGGTGCCTCAGCCTTTTCACACCTGTCCTATTTCTCCCTGCTGGTCTTGATCTGCTCTTTGTCTGTCACCTGCAATGACATTGGCAGAGACATGCGTTCAACAGGGGTCACCAATTCTTCCTTGGTTGTCGGGAGACACGTGCGTAGCTACAGTCACCTCCAAGGAGATGTGAGGACGAGGAAACTCTTTTCCTTTCAGAAGTTCTTTCTCAGGATTGATAAAAATGGCAAAGTCAATGGCACGAAGAGCAAGGATGATCCCTTCAGTAAGGAAGGTGAACAAACGAAGCACCCCTCTGTACTGATTGTGCCAGCCTTCTCACTGACCTCAGAGTATGCGTTTTTCTCCAACCCCCAGTCCCCCCATCCCCTCCTTTTGAAGAAGAGCTGGCACCTACAGCTCACAGCGAAAGGGGTAGAAGAAGAagagcaagaagaaaaaaaaatccctcagTTTTGGTTCGAATACCACATCAAAGCTTTCAAAAGCAAACATCTAGAACAGGTGCTTTCTGCGACCTGCGCCACATCTTATTGTCAAATCACAGGCTTCAGCAACGGCAACTCATCTCTGGTACTGCAAGAGAAAGAGTTCTGTTCTCACATTCAGCCCAATCAGGTGGTCCTGTGGaGTGAGTTTGGTGTTGACTGCAAACTGAAGGAGAGAATAGAGGAGAATGGCTACAACACTTATGCATCGTCAGAAtggaagaacaagaagaagcAAATGTTTGTGGGTTTGAGCGCTAATGGCACGCCGCTCCGAGGAAAGAAAACGCGAAGGAAAAACACTGCGACACACTTTCTCCCCATCATGCaatacagcacagaacacaACAAGCTGCATCAGGCTGATGCCTCAAGACCATCAGTGTTGTTGCCTATGAAGCGTGGCGCGGGCATGATGATTGAAATCCAGTTAGTGGCACAGCTGCTCGAgaTGATGAGTAAGTTCTGGCAAGTCACAGAAGTTACTATAAAAGGCTTGGTGTATTTTTCTGGGAAAATCTCGAAATTTAATCTGGAAAACAACGCCAAATATGAACAGAGGGATGGAAAAGTCACCTTTGTTTGTAACGTGAAAATGTTAAGTGTCGGATATCTTTTGACCTCCAGATTTGTGCTCCGTACGGCCTCTGGTTCCCATGATGCCATCCCAGTCTGTGGCCAAGCTCACCTCAAAAGCGTTCAGCTGCTGCCAGGAGCGGTGACAAGGCCGCGCATTACTGTAGTGACACCACAGACACCaCTGTCAGGACCAGGCCATGCAGTTTCTACAGCTATTCCCCTTGACCCAGTGTGTCGTGCCTCCCAGCACCTTCACATGGTGTGCTCCTACACTGGGCAAGGGCCCTCACTGGTAGGCCTCCCGGACCTTGGCCTGAAGCGCATCGCAGGTTTTCTTAGCGTCGCCCAGCAGCATGCCTGTGTTGGGCTTGTAGAAGATGGGATTGTCCACTGCAGCGTAACCCACTCCCAGGGACCTCTTCATCACGATGACCTGCGAAGACCACAAGGACCATCAgtggataTAATAAAGTACTGTGGAAGCCTACTAAAGCGAAACACATCGTACCACACACACAGGCGCTGTTCAGCACAGCTTCCACCCTGGCTAAGGGGAACCAGCGGCACGGTGCAGGAGCGGCTGCCGAGAGGGGCGGGAGAGACCCGTTTCAGGCTGGCTGGGATTAATCAGCTGGAGGATGTTTTTGAAATGGTATCTGGTGTTGCTCACCTGTTTGGACTTCCAGACCTCAAGGACTGGCATCCCAGCGATGATCGAGTTGGGGTCTTCTTGGGCAGCGGAGTTCACTGTGTCATTTGCACCGATAACAAGGACCAGGTCTGTGTCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96593 lncRNA upstream 311399 10977663 ~ 10978504 (+) True G77395
TU96533 lncRNA upstream 957405 10330720 ~ 10332498 (+) True G77349
TU96526 lncRNA upstream 973805 10315346 ~ 10316098 (+) True G77346
TU96516 lncRNA upstream 984661 10303195 ~ 10305242 (+) False AMCG00010021
TU96453 lncRNA upstream 1292018 9996354 ~ 9997885 (+) True G77285
TU96744 lncRNA downstream 195709 11584954 ~ 11586100 (+) True G77517
TU96742 lncRNA downstream 201973 11591218 ~ 11639790 (+) True G77515
TU96772 lncRNA downstream 352403 11741648 ~ 11743415 (+) True G77543
TU96872 lncRNA downstream 635576 12024821 ~ 12025152 (+) True G77621
TU96927 lncRNA downstream 759686 12148931 ~ 12152321 (+) True G77661
AMCG00010036 mRNA upstream 45534 11215711 ~ 11244369 (+) True AMCG00010036
AMCG00010037 mRNA upstream 108898 11177092 ~ 11181005 (+) True AMCG00010037
AMCG00010034 mRNA upstream 203982 11084680 ~ 11085921 (+) True AMCG00010034
AMCG00010028 mRNA upstream 379961 10894209 ~ 10909942 (+) True AMCG00010028
AMCG00010024 mRNA upstream 491224 10793932 ~ 10798679 (+) True AMCG00010024
AMCG00010043 mRNA downstream 39314 11428559 ~ 11439004 (+) True AMCG00010043
AMCG00010048 mRNA downstream 51394 11440639 ~ 11457795 (+) True AMCG00010048
AMCG00010049 mRNA downstream 68868 11458113 ~ 11465569 (+) True AMCG00010049
AMCG00010050 mRNA downstream 77680 11466925 ~ 11469784 (+) True AMCG00010050
AMCG00010047 mRNA downstream 81907 11471152 ~ 11473944 (+) True AMCG00010047
TU96625 other upstream 134434 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 9926069 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 9954853 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 9962339 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 10252461 1037206 ~ 1037442 (+) True G75745
TU96770 other downstream 311461 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 4251716 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 4668286 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 5834637 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 5856392 17245637 ~ 17246988 (+) False AMCG00010160

Expression Profile