RNA id: TU96652


Basic Information

Item Value
RNA id TU96652
length 2769
lncRNA type sense_over
GC content 0.38
exon number 2
gene id AMCG00010041
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11289903 ~ 11389245 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCATGCTTTTTAGTGTTGTTTCCAGCTTCTGTATCATTTGTATATTGTgagtttcagagccataagtgagcactggtagtatgcattgatcacaTACTTTGATACGCTTGGTTTCCTTTGAATAGCATGCAGTTTCTTCCAAATGACAAACTGTCTAAATACATCACAGAGTCCTCttctaataaatacaacatgaagactgaaggaaaataaaaactaaacagaacTACGAGttgttggcttgtttgtttattaggtATCTGTGATAATCCTTGATAAACAGTCTggagatttaaaacaaaaattcatTGCTCTCCAAGGCATGCTGGATTCAAAATTGAAATGTCAAGGGATTGGTTTACAAAGGTTTACAaagctgatatcaagaatataCAACCTACACCAATaggaactatatatatatatatatatataaaaagtactAGAAAACAGTCTGCTGTCCACAATGGTAGAATGTGAATTAAATGACTCCCTTCGTTTAATGGACCCTTCCCTTTTCTCGTGGACACAAGTCTGATCGGTTTGTGCAAGCCAAGACATCAAGTGTTcccagtgtttttaatttaacgtGAGAGTGCACAAAACAAGGTCTAATTATAATAACGTGCAGCTGGTCCGTTCCTGCAAGCAAAAATCCAGCCTCCTAACACCCAGGCAAGCCAAGGAATTAATCGTGCCTTTATGTTTATGTAGCTcagcaaaaatacaaaacaaagcaaacaaaagttGTACGTTTATAGTCATACCAAATGCTTcttgaagaaaatgtgtgaatTGGTCAGGTTAACAAGCTTGGAGAGGTAGGGTTGTTGTAATGGTAATGTTTGTTAGttacatataaatgtttttatttaaatgcatatcaggtctgtttaaattattaagaTAAGCTAGCTATATTAAATACAGTCTTGATGCAcacaaaattgtatattttctgtacTTCACTGAACAGCAGCTGAAGAACATGGCAAGACATGTTTGATGGAGACATTTTGTAAGGGGATTTACGCTTCCCACAGCACAAACTCCCAACAGCTCCATGCAGACTTCTtataaaaagaaagttaaaaaaatgtgcagttGCACAAATAAAAGCTTAGCCTACATATTACTTCAGGATTTTGCCATGCCTTATACACTCAATCGCTGCTGCTCAAATGAAGTCAAATGTAATGCATTGCTACTTTAAAGTGTTAAGCtggttatatttgttttaatgccaTTGGGGTGGGAGAATAATTAATACAGTAGGTTTAATTTAGAGCATTACCATCAATCTCATCATACTCCAATTTTAATGTTAGCTGGAAAAGCAACCACTAGCTTGAATTATTACCATTTCATCCACAAACACAGGAGATATAAATATTTCCTCACAACAAAGGCATTGGTTCCTGAGGCTGCTTAGATTCATGACAAACAACTTTCTAAATTCTGTAAGCGTAAGGGCTTCTAGTTGTGAAGAAACATTTAGTTCTCTGTTCAGGTTTACTTCATTTTAGGACCTTGCTGCCGCTTTACCTTCAAAATCCTCTAATACTGAAAGGCAGCCACCTGTCCCAAAGGTCCCGAGAACAGCATCAATTTTAACAGTTCTACCATCCTTCACCGTTTGGTTTACATGAAATACCACACACCATGGAAATCACAAAAAACACTGGTGTTCTTCACAAACAAAGCTGGTTTACAACTTAACTaaacatatataacaaaaaaattatttgatcatGAATTTAAAGGAGTGTCTGAACTAGATTTTAAAGCTAAAAAATGATTATGTAGAAAATATTTAACCTTACAGCctattttatctttttctaGATTCTTAAGCAGGAGAAAGATTTCTGCAGTACACACTATTTGGCTggtgaaaacaaataatgtggTACTACCATGGCTAGATTTCTTACTTGCTACTAAAAAGCGGCTAAACTTAAATAAATCTggtccaaaaaaacaaaacaaaaaacacgttTCAATTAAGCTATTAAGGGAAGAGATCACTACAATTGATTTCTACTGTGTTGCGTGTACACCTTTTGTTTCTGGAAAATCTTGTCTGGAAGCTGGAAGCGCTGAGCAAGAGGGGTCACTGATGTTAATCTGCCAATCAGCCTCTTTCTGAATTCAAGGCCCTCACTGGTAGGCCTCCCGGACCTTGGCCTGAAGCGCATCGCAGGTTTTCTTAGCGTCGCCCAGCAGCATGCCTGTGTTGGGCTTGTAGAAGATGGGATTGTCCACTGCAGCGTAACCCACTCCCAGGGACCTCTTCATCACGATGACCTGCGAAGACCACAAGGACCATCAGTTTGACTGAAAGACATCGCTCAAATCCAGTTTTGATGCTAGGAACAATCCAGCTTTCTACACATCTCCCCATGGTATGTCTTTTGCACCACTGCCGAGATGCTCTCTCCTATGTTCTCCTTCCATTGCTGGAAGCTGGACTCCACCAGAATTGCCACTTTTACATGCTGAGCCAGGCGAGGACTGGTCAGTGTGTTTAAATTAGCCTGCTGCTGGATGGAGTACTGGTGTATATCAGTAGAGGGCAAGAACCTCTTGACTAGAACGTCCAATGAGGTGGATAAGGTGTTAAAACCCATTCTGATTGTGTGGTGATTTTTAATCACATTCCAGTATTAGCAGTGCTGACAAGTGCCCTGGCCACACTCCTGTTCAGGCTCTGTCTCGCTTTGGATCCTTTggaatgaaaatcaataaatgttgtTGATGCTAGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96648 lncRNA upstream 29035 11355091 ~ 11355362 (+) True G77445
TU96593 lncRNA upstream 405893 10977663 ~ 10978504 (+) True G77395
TU96533 lncRNA upstream 1051899 10330720 ~ 10332498 (+) True G77349
TU96526 lncRNA upstream 1068299 10315346 ~ 10316098 (+) True G77346
TU96516 lncRNA upstream 1079155 10303195 ~ 10305242 (+) False AMCG00010021
TU96744 lncRNA downstream 197755 11584954 ~ 11586100 (+) True G77517
TU96742 lncRNA downstream 204019 11591218 ~ 11639790 (+) True G77515
TU96772 lncRNA downstream 354449 11741648 ~ 11743415 (+) True G77543
TU96872 lncRNA downstream 637622 12024821 ~ 12025152 (+) True G77621
TU96927 lncRNA downstream 761732 12148931 ~ 12152321 (+) True G77661
AMCG00010036 mRNA upstream 140028 11215711 ~ 11244369 (+) True AMCG00010036
AMCG00010037 mRNA upstream 203392 11177092 ~ 11181005 (+) True AMCG00010037
AMCG00010034 mRNA upstream 298476 11084680 ~ 11085921 (+) True AMCG00010034
AMCG00010028 mRNA upstream 474455 10894209 ~ 10909942 (+) True AMCG00010028
AMCG00010024 mRNA upstream 585718 10793932 ~ 10798679 (+) True AMCG00010024
AMCG00010043 mRNA downstream 41360 11428559 ~ 11439004 (+) True AMCG00010043
AMCG00010048 mRNA downstream 53440 11440639 ~ 11457795 (+) True AMCG00010048
AMCG00010049 mRNA downstream 70914 11458113 ~ 11465569 (+) True AMCG00010049
AMCG00010050 mRNA downstream 79726 11466925 ~ 11469784 (+) True AMCG00010050
AMCG00010047 mRNA downstream 83953 11471152 ~ 11473944 (+) True AMCG00010047
TU96625 other upstream 228928 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 10020563 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 10049347 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 10056833 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 10346955 1037206 ~ 1037442 (+) True G75745
TU96770 other downstream 313507 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 4253762 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 4670332 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 5836683 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 5858438 17245637 ~ 17246988 (+) False AMCG00010160

Expression Profile