RNA id: AMCG00010048


Basic Information

Item Value
RNA id AMCG00010048
length 3194
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00010048
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11440639 ~ 11457795 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTCGGTGAGTTTGATGGCCCTGTATGAGGACGAATCGGTGGAGGTCCGATACGGCGACGGCTCCTGTCTGCAGCTCTCTCCCTGCGGCTGCGAGTCCGTCCTGGAGAAGAAGTCACCCGTGACGTCACACCCTTTACAGCCGAATGAGAGGATCCGACAAAGAACCCGCTTCGAGCTGATGGTCAAGGCACTGGAGTTCAGAAACAGGTTTGCCACTCGGCCTTATCTCCCAGGAGAACTTATCCCGGCGAACAACAGAACACATTTTTACATCGATGTCTTGGAGGCTGAGTGGCCTGCCGAGGGCTCCGGTGGTGTTAAGCTCACTGACAATGGCCGGGTAACCGTGTCCTCTGTGGATGGGAGAGCTTTTCTTCACCTTTCATCTTCTGGGCAGGAGTTTTCAGTGGAATTTCTCTGCAAAGCCAGTCCAAAGATTTCCCAGCCTCTCACCCAGGAGGCAATGACAAGAAATACTGGGGGACATTCAGATATCGAGGAAATTGCAAGAGCAAGAACCTTCAAcatgaaacaaagtaaaaccGCACCTAGGATCCCTGAAGGCAAGGAAAATAGACACTCGGAGGTTACCGGTTTGGGGTCCTGTTCTAACCACAGCAAAATACATCAACAATCCCCTGTGCCTGGCACCTCGCAGACGCACCTCTACACCTGGGTGCTCCAGCACCATTCAGTGTTATCCTCTCCAGCCATCTGGCACCATCCCTTATCTCTAGCAATTGCAtttatgaagtccaaagaggaAGGAAACACAGCTGCCGGGAGTACTGAAGGAGGGAGGGCGCCAGAAGTGAGCTCTAACTCCCAGGAAGCTGATGTATTGAAGAGGGAGACCAGCTGCTTGCCTGGGCCTCTGCCCCTAAATTGCCCCATGCCTCACCAACACAGgtGGAACTATGGGAATACCCACTCAGATGGTGAGCAAGACTTGGAGCAACACCTGCGTACTGAACTTGTAAAAGTCGTTTGGTGCCAAGGAATAGTGTATCGGGTTATCAAGGGACTGATCACCACAGTAGAAATTTACCCTGGTGATGGCTCAGTCATCAGATCAAAAGGAGCAGTTGCAAACTACTTCACTCATCACACAGCCAAAGGCATTGCAGAGCAGACTGAAGAgaagatgtatttattgagtAGTCTACCCCCTGATGTACCTGGACAGAGATATTCAATTTCATCAGTTGTCACCCGTGCTAACAGAATCCTGCAGAGCTATAGCCAGACCAGACTTTCACTGAAGCTTCCTAACACTTTCTGCTGCTGGAAGGAGGAGAATAGCCTATCAGTCCTGACAACCATCCCAGTTCTTATAGAGGAAGCGCACATTCCAGACACTGGACGCTTCAGTGCCTTTTCGGATGGCAGAGTGCATGTTCTCTTCAGGGATGGGGTGACTCTGCACATGATGTGGAACTTCAGCTCTCAGTCATCAGATGCagagGGAAGGAGAGCAGCCCAGTTTCCCTCTGTGGATCATCAGCTGTGTGGGTGGTGTCAGCTGATCATGCCTGATGGGCAGTGTCACCTGGTATGTGAGTGCGGCTGTGAGGTGGTGCCAGTGGGTAAACCAGAGCCAGCAACGAAGAGGAGAGCCTTCCAGAAATGTCCAGTTCTCCTTGAAAACGGCGGGCTGCTGAAGTCCAATGCTGACCCCGATGGACTGAGCCGCAGTTCTTGTGAGGGTAGGGGTTCCACAGCGGGGCTCAATGAGAAGAGCATCTCTGAAGCTTTGGAAAGAACATCTAAAGCCATCAAAGACATTGAGATGCTGTTATCTAGCCGGTCTTCCGACAGCCCAAATGCTGTATAGGAGAGGATAGTGTTTTGTACCGTTACATTATTTCACACCTCATAACCATCTGAACCATCTCTTGTAGGTAATTTAGAAGCAGCAATGTATTTTGTGGGAAGCATAATCAGTTGTGTTGTTTCTGAGCAATGGAAGAACATTAGgatattatgaaataatttaacACCTCTGAAATGGTATCAGTGAGCATGTTTCATAATAATGTTGAACATATTTCTTAGTTATATTTTCTGCCTTTCTAAATAACTACTGCTgcagaaagaaagataaaaagatGCACTTAAGTATCCTAGTTTTGTGAAGAAATCTACAGCTGGGGAGTGATCTCCTCAAATGAAGACCATTTAGGCTGCCATCAAACTCATGAGACAGTTTctccattgttttaaatgtattttcaaagagCGGAACGCTTTCTCTTCAGGGTTGAAGGGTAATTCGTGTCCAGGGAAGGGAGCCAGCAGCACTGCACTTGTGCAGTATGGATTAACTTGGCAAACAATCTAAGCAGGGTTTGTGGTGATCTCACAGCACCTTCAATATGGTCTGCcaccagcaacaacaacaacagaacaggaaatgtgcatgtgtttaaaaaaagtcaattcTGCTTTTACTTGTGTTTGCGTGTAGAAATGGTGAATATTGTGGTGTCCATTTCATATTCGGAGACAGGTGGGCTTATTCCTTCACATATAAGCACTGATATCCCTAAAGGATAAACAAGTGATTGTGCTTAAGCCATCCCGTGGAATGTTTAGAAAGCTTTATACGATAATGAGTTTCTTTCCCAGTAAATATGGTACTTGGGAAATTAATGGATTTAAGGTAAGACGTGCTCTGTTTACATTCCCGACTACAATTCattgtttgtaattaaatgtgggGTGAGTTAACAAAGCATTCTTCCCAGACGTATTTCCCAATAGTCAACATGTGTCTTTTGACTCTGCTGTACAGATCAGGGTTTTAATGAATTGCAGATGTGAAGCCACTAAAGCATATCACGAACATTAACCCTTTAATTCCCCTGATGAATATTCTGTCTGActtgcaatttttttattttggctgctgaagtaaaatatatatataaataaaataaatgtgtatttacctccagtatttttgattgtttggaAGTCTTCATCTACAGCCCTAAGTACTTTTATAAAACAGAAGGTAATATATAGCACCTGAATGGCaaattatttgcattgtatCTGTAAAAAATCCTAAACCTTGTTTCATAAACATTGGATTATTTGCTTGTATTTTCAGAGTAGCCACATTTTGAGattgtttaaaatctttgtCAACCAACTCTAAACCATGTACACTATACttaccataaa

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96652 lncRNA upstream 53440 11384397 ~ 11387199 (+) True AMCG00010041
TU96648 lncRNA upstream 85277 11355091 ~ 11355362 (+) True G77445
TU96593 lncRNA upstream 462135 10977663 ~ 10978504 (+) True G77395
TU96533 lncRNA upstream 1108141 10330720 ~ 10332498 (+) True G77349
TU96526 lncRNA upstream 1124541 10315346 ~ 10316098 (+) True G77346
TU96744 lncRNA downstream 127159 11584954 ~ 11586100 (+) True G77517
TU96742 lncRNA downstream 133423 11591218 ~ 11639790 (+) True G77515
TU96772 lncRNA downstream 283853 11741648 ~ 11743415 (+) True G77543
TU96872 lncRNA downstream 567026 12024821 ~ 12025152 (+) True G77621
TU96927 lncRNA downstream 691136 12148931 ~ 12152321 (+) True G77661
AMCG00010043 mRNA upstream 1635 11428559 ~ 11439004 (+) True AMCG00010043
AMCG00010041 mRNA upstream 51394 11289903 ~ 11389245 (+) False AMCG00010041
AMCG00010036 mRNA upstream 196270 11215711 ~ 11244369 (+) True AMCG00010036
AMCG00010037 mRNA upstream 259634 11177092 ~ 11181005 (+) True AMCG00010037
AMCG00010034 mRNA upstream 354718 11084680 ~ 11085921 (+) True AMCG00010034
AMCG00010049 mRNA downstream 318 11458113 ~ 11465569 (+) True AMCG00010049
AMCG00010050 mRNA downstream 9130 11466925 ~ 11469784 (+) True AMCG00010050
AMCG00010047 mRNA downstream 13357 11471152 ~ 11473944 (+) True AMCG00010047
AMCG00010044 mRNA downstream 35891 11493686 ~ 11516565 (+) True AMCG00010044
AMCG00010045 mRNA downstream 62444 11520239 ~ 11573201 (+) True AMCG00010045
TU96625 other upstream 285170 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 10076805 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 10105589 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 10113075 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 10403197 1037206 ~ 1037442 (+) True G75745
TU96770 other downstream 242911 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 4183166 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 4599736 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 5766087 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 5787842 17245637 ~ 17246988 (+) False AMCG00010160

Expression Profile