RNA id: AMCG00010050



Basic Information


Item Value
RNA id AMCG00010050
length 543
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00010050
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 11466925 ~ 11469784 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCATACATCTGCTGTAAGGATCCCCACTGCCTCCTGGGGAGCACAGGCCTGGGATCTACAAAGGGCAGAGGACACCAGCAGAAGCAGCGAATGTATTCCAACTGAAAGGTGCAGTCAGGATGGCTTCTCAACGAGAAGTGTCCTTGAACAACCCCGGAGAGATGAGGGAACCCCCTGGGAAGATGCCAGTCGTACCCCAGCGGAGAAACTTGTGAGCACCCGCGCTGCTTGTGAAGAGTTCATTAAAAACCATAAGGTGTCAGAAGCGATGATGGCACTGGTCAGATGTGTCGCTCTCTCCAGGCTGGTGTACGGGGATGGCCACTGGCGTCTGGCGGAGTCATTGGCCAATGTAGCTCATGGATACCTGCAGCTTCGAGAAATTCATCAAATGAGTTTCCTCCTTGACTGTTTTACTCTGACAGAGGCTTTTCAGAACCTTCAAAAGGCAGAGAAGATCTATGGGGAGTATCACCATGTGGGCAATGTGCAAGTCCAGAAGGTCTCTGAGAAAGACCTGGCTCAGGCACTGGGCAGGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU96652 lncRNA upstream 79726 11384397 ~ 11387199 (+) True AMCG00010041
TU96648 lncRNA upstream 111563 11355091 ~ 11355362 (+) True G77445
TU96593 lncRNA upstream 488421 10977663 ~ 10978504 (+) True G77395
TU96533 lncRNA upstream 1134427 10330720 ~ 10332498 (+) True G77349
TU96526 lncRNA upstream 1150827 10315346 ~ 10316098 (+) True G77346
TU96744 lncRNA downstream 115170 11584954 ~ 11586100 (+) True G77517
TU96742 lncRNA downstream 121434 11591218 ~ 11639790 (+) True G77515
TU96772 lncRNA downstream 271864 11741648 ~ 11743415 (+) True G77543
TU96872 lncRNA downstream 555037 12024821 ~ 12025152 (+) True G77621
TU96927 lncRNA downstream 679147 12148931 ~ 12152321 (+) True G77661
AMCG00010049 mRNA upstream 1356 11458113 ~ 11465569 (+) True AMCG00010049
AMCG00010048 mRNA upstream 9130 11440639 ~ 11457795 (+) True AMCG00010048
AMCG00010043 mRNA upstream 27921 11428559 ~ 11439004 (+) True AMCG00010043
AMCG00010041 mRNA upstream 77680 11289903 ~ 11389245 (+) False AMCG00010041
AMCG00010036 mRNA upstream 222556 11215711 ~ 11244369 (+) True AMCG00010036
AMCG00010047 mRNA downstream 1368 11471152 ~ 11473944 (+) True AMCG00010047
AMCG00010044 mRNA downstream 23902 11493686 ~ 11516565 (+) True AMCG00010044
AMCG00010045 mRNA downstream 50455 11520239 ~ 11573201 (+) True AMCG00010045
AMCG00010046 mRNA downstream 150366 11620150 ~ 11636169 (+) True AMCG00010046
AMCG00010052 mRNA downstream 260696 11730480 ~ 11740511 (+) True AMCG00010052
TU96625 other upstream 311456 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 10103091 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 10131875 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 10139361 1322618 ~ 1327564 (+) False AMCG00009844
TU94585 other upstream 10429483 1037206 ~ 1037442 (+) True G75745
TU96770 other downstream 230922 11700706 ~ 11701081 (+) True G77541
TU97434 other downstream 4171177 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 4587747 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 5754098 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 5775853 17245637 ~ 17246988 (+) False AMCG00010160

Expression Profile