RNA id: AMCG00010094


Basic Information

Item Value
RNA id AMCG00010094
length 2010
RNA type mRNA
GC content 0.42
exon number 15
gene id AMCG00010094
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 14440450 ~ 14447551 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTGAATCCATCCCTCAATTGTAAAGTGGGACAATcagccatttttaaaatgaagtggGTAACTTTAATTTCACTTGTAATTTTTATATCCTTTCCTCAGACCTCTGCAAACCGGGTCTGTGAATTTGTTTCTGCTGTAAAGGAACAGGGATTCAAAGCCATTGTTCTGGTCGGGCTGGCTCAGAATCTGCCCAAGAGCACTTATGAGGAGCTGAGGCCGTTGCTCATCCAGAGCGCAATAGTGGCACAGTCCTGTTGTGGAGCTGAGCCCAGCGCTGACTGTTCAAGAGAGGAGGCAGACCTTTTCCAGAGTGCGATATGCGCTTCTCATGAAATCACAGAGAAAAACGGTCTTGATGACTGTTGCAAATTACATGGCACCCAAAGAACTCATTGTTTTGTCgaccacaaacacaaaattccACACGATGCTTCTTTAAAACCTGATATACCAGAAAGTGAAAAGTGTGCAGACTATGAAAAAGACAGTTCGACATTTATGGGCCAcTTTATCTATGACTTTGCAAGGCGTCATGTTCTTCTGCAGCCACAAGTCATATTAGGAATTGCTCAAGGATATGAAAAAATTATCAAAGAATGCTGCAAAGATGCCAAAGGTGTCCATACCTGCTTCGATGACAAAAAGGCTGGTTTTAAGCATGCAATTGAAAACCGTGTCTCCGAGTTGAAATCTACATGTGTGATTTATCATACGTTTGGAAAGCGGATTCTCATGGCCAAgaaACTGGTGCAATACAGTCAGAAGATGCCACAAGCAACCTTTGCAGAAGTCAAGGCTATTACTGAGAGAATTGCAAATGTGACAGCCACCTGTTGCAGTGGTGATATGATTCAATGCATGAAAGAAAGGAAACACATGATCGATGAATACTGCGCAAATCATGAAGTTCTGGCGCGCACCAAACACTTTGCAGAGTGCTGCAAGGCATCTATAATTGAACGGGGGGCATGCATTGAGAAAATGAAGGCGGATGACAAACCTGAGGGCCTGTCACCTAAAGTTGAAGGTTTCATCAAAGACAAAGATGTCTGTCAGAAATACGCAGAAGCCCGTGATTTGTATATTGGAAAgtTTCTTTATGAATATTCAAGAAGGCATCCCGAATTGTCTATACAAATTATCTTGAGGATAACCAAAAACTATGAAGAGGTTTTGGAAAAGTGCTGCAAGACTGATGATCCTCCTACCTGCTATGGCTCAGCTGATGCACAACTAGCAAAGGCTATTGAGACTGAGCTACtgcactttaaaaatatgtgtgCCTTTGAGACCACCAAGGGGGAAGaagcatttgaaaaacaGATGATTGTCCAGTATACAAGAATAATGCCACAAGCTGGTTTTGAAGGCGTGGAATATGTGGCCCATAAAATAGCTGATGTCATGGATCACTGCTGCAGAGAGAAAGATCTCGACCATCATTTGCTTCCCTGTGCTGAGGAGAAACTGACCAATGCTATTGATCAGACTTGTGTAGATTATGACCCTGCTACCATAAATGCTCACATTGCACACTGTTGCAACAAATCCTACTCAATGAGAAGACCCTGCCTTCGCGAGATCAAACCTGACACAGAGTTTGTGCCACCAGCAGTTTCAGAAGACCTGTTTCCCATGGGACCTGGATTGTGTCACGGGACACCAAAAGATTTGTTCAAGTCAGCAAAGAGGCTCCTTTATACTGTAGTGAGACTGAAGACTACTATACCAGCAGAGAaacttcaaaaaataataacatcgTTCCATGACCTAAAGACCAAATGCTGTGCTGAAGCTGACATCGCAGCTTGCTTTGCAGCTGGGCGAAAACAACTGGTGATTGACAGTCAAGCACTTGTTGCCTAATGGATTtatgGTTTCATTTCAAGACAAGGAAGCTACACTGGCACCATTTTCTTGCACCTTTAATGCAtgatttgcaaaatgtaaacattcacAGTGCTTCTGTAAAGAGTCTACATGCTGTAATATTCCTGAAAgtcaaaa

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
K16144 AFP; alpha-fetoprotein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97076 lncRNA upstream 1040254 13399908 ~ 13400196 (+) True G77796
TU96941 lncRNA upstream 2225929 12209013 ~ 12214521 (+) True G77673
TU96938 lncRNA upstream 2262961 12177228 ~ 12177489 (+) True G77670
TU96937 lncRNA upstream 2269129 12170098 ~ 12171321 (+) True G77669
TU96927 lncRNA upstream 2288129 12148931 ~ 12152321 (+) True G77661
TU97279 lncRNA downstream 512721 14960272 ~ 14961505 (+) True G77958
TU97287 lncRNA downstream 544368 14991919 ~ 15029371 (+) False AMCG00010101
TU97274 lncRNA downstream 556483 15004034 ~ 15047855 (+) True G77954
TU97337 lncRNA downstream 757123 15204674 ~ 15221655 (+) True G78007
TU97343 lncRNA downstream 781342 15228893 ~ 15232199 (+) True G78012
AMCG00010093 mRNA upstream 21643 14407608 ~ 14418807 (+) True AMCG00010093
AMCG00010095 mRNA upstream 43567 14376602 ~ 14396883 (+) True AMCG00010095
AMCG00010089 mRNA upstream 133321 14294518 ~ 14307129 (+) True AMCG00010089
AMCG00010087 mRNA upstream 801789 13625828 ~ 13638661 (+) True AMCG00010087
AMCG00010085 mRNA upstream 924945 13468696 ~ 13515505 (+) True AMCG00010085
AMCG00010096 mRNA downstream 42360 14489911 ~ 14514093 (+) True AMCG00010096
AMCG00010098 mRNA downstream 208934 14656485 ~ 14671402 (+) True AMCG00010098
AMCG00010099 mRNA downstream 252769 14700320 ~ 14740969 (+) True AMCG00010099
AMCG00010102 mRNA downstream 530595 14978146 ~ 15000756 (+) True AMCG00010102
AMCG00010101 mRNA downstream 568832 15016383 ~ 15032181 (+) True AMCG00010101
TU96770 other upstream 2739369 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 3284981 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 13076616 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 13105400 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 13112886 1322618 ~ 1327564 (+) False AMCG00009844
TU97434 other downstream 1193410 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 1609980 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 2776331 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 2798086 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 2826836 17274387 ~ 17277998 (+) True G78396

Expression Profile