RNA id: AMCG00010099


Basic Information

Item Value
RNA id AMCG00010099
length 1377
RNA type mRNA
GC content 0.59
exon number 8
gene id AMCG00010099
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 14700320 ~ 14740969 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCAGGCAAACCTGGGATTTTTTTAGAGAGACATGTTCATCTCAACCAGGAGAAGTTAACGGTGGTGCTGACATCCGGTGGGAAAAAGAAAGACGAGAGGAGACAGCAGAGAGCGCCAGGCGGAGGAAAGCCCCAGAATCCCCAGCAGCCGTCACAGCCGCCCATGCAGCCTCAGCAGCCCCCGCCACCGCAAGTGCAGCAACAGGCGCAGACCGCCGAGCATCCACAGGGCAACACTAAACACAACCGGGAGCACCCTCGGCAGTACCAGGGCCCGGTCTCTCACCCCTCAGGGAGGCAGGGCCCCGCTCACCACGGCTACAGCCAGAACCGCCGCTGGCACCACAACCAGAAACACGTGGTGGTGCAAGGGGCCGCTGGCGATAAGGAGGCCCCTTCAAGTAGCAACCGCAACACCAAAGAGACTGAGAATGTGAAACCGGAGGAGCCCGTCCTCCCCAGGCCCGAGCTGGAGTGCGACAGCGGCCACACGGGGACGCCCTCTCAGCCTCCACTCTCCGATGGGAAGCGCCGGGATAGCCATCCAGATGCACCCAAAGTCAACCTGCTCCAGTCATCCAAGGAGAGGCTGAGAAGGAGGCTAAAAGAAAAGGAGGAGGTCCTCATCCAGACCACCAACCCTCAGAGGAACCGCATGGACAAGTTGATCGAGATCCTCAACAGCATGCGCAACAACAGCAGCGACGTGGACTCGCAGCTCACCACCTTCATGGAGGAAGCCCAGAACTCCACCAACTCTGAGGAGATGCTGTCCGAGATCGTCAGGACCATCTACCAGAAGGCCGTGAGCGATCGCAGCTTCGCCTCCACCGCGGCCAAGCTCTGCGACCGGATGGCCCTCTTCATGGTGGAGGGGACCAAGTTCCGGTCCCTGCTTCTCAACATGCTGCAGAGGGACTTCACCCGCCGAGAGGAGCTGCAGCAGGCGGACGTGGAGCGCTGGCTGGGCTTCATCACATTCCTGTGTGAGGTCTTTGGCACCATGAGGAGCAGTGCTGGGGAGCCCTTCCGAGTCCTTGTCTGTCCCATATACACCTGTCTCAGGGAGtttaatgtaaaacattctTTCCCCTCTGCCGACCAGCTTCTAGAGTCTCCAGAGGTAAAGGAAGATGCTGTCCTCTGTTGCTCCATGGAGCTGCAGAGCACCGGCAAACTGCTGGAGGAGCAGCTGCCCGAGATGATGACAGACCTGTTGGCGGTGGCGCGGGACAAGATGTTGTGCCCGTCGGAGTCGCAGCTGACACGCTCCCTGCTGATGGAGGTCATAGAGCTGCACGCCTATCACTGGAACCCACTGGAGGCTCTTACCACCCAGTACTACAACAGGACCATCCAGAAACTCACTGCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97076 lncRNA upstream 1300124 13399908 ~ 13400196 (+) True G77796
TU96941 lncRNA upstream 2485799 12209013 ~ 12214521 (+) True G77673
TU96938 lncRNA upstream 2522831 12177228 ~ 12177489 (+) True G77670
TU96937 lncRNA upstream 2528999 12170098 ~ 12171321 (+) True G77669
TU96927 lncRNA upstream 2547999 12148931 ~ 12152321 (+) True G77661
TU97279 lncRNA downstream 219303 14960272 ~ 14961505 (+) True G77958
TU97287 lncRNA downstream 250950 14991919 ~ 15029371 (+) False AMCG00010101
TU97274 lncRNA downstream 263065 15004034 ~ 15047855 (+) True G77954
TU97337 lncRNA downstream 463705 15204674 ~ 15221655 (+) True G78007
TU97343 lncRNA downstream 487924 15228893 ~ 15232199 (+) True G78012
AMCG00010098 mRNA upstream 28918 14656485 ~ 14671402 (+) True AMCG00010098
AMCG00010096 mRNA upstream 186227 14489911 ~ 14514093 (+) True AMCG00010096
AMCG00010094 mRNA upstream 252769 14440450 ~ 14447551 (+) True AMCG00010094
AMCG00010093 mRNA upstream 281513 14407608 ~ 14418807 (+) True AMCG00010093
AMCG00010095 mRNA upstream 303437 14376602 ~ 14396883 (+) True AMCG00010095
AMCG00010102 mRNA downstream 237177 14978146 ~ 15000756 (+) True AMCG00010102
AMCG00010101 mRNA downstream 275414 15016383 ~ 15032181 (+) True AMCG00010101
AMCG00010109 mRNA downstream 344133 15085102 ~ 15099005 (+) True AMCG00010109
AMCG00010110 mRNA downstream 471036 15212005 ~ 15217546 (+) True AMCG00010110
AMCG00010111 mRNA downstream 699022 15439991 ~ 15442927 (+) True AMCG00010111
TU96770 other upstream 2999239 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 3544851 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 13336486 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 13365270 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 13372756 1322618 ~ 1327564 (+) False AMCG00009844
TU97434 other downstream 899992 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 1316562 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 2482913 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 2504668 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 2533418 17274387 ~ 17277998 (+) True G78396

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000188_00318480_00371627.mRNA True 4255 mRNA 0.48 20 CI01000188 317827 ~ 372439 (-)