RNA id: AMCG00010101


Basic Information

Item Value
RNA id AMCG00010101
length 5536
RNA type mRNA
GC content 0.50
exon number 21
gene id AMCG00010101
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 14991919 ~ 15032181 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGGGTCCTGTTTAGGTTTTGAAATACTTGTAAGTGGTCCTTAGTTTGACATTAGCTGGCAATAAAAGAAGGCAGAGATTTGATTTGCACAATCTTCGCCCCTTGCATATGGTGAAGATGGGCAaaccacaaaagaaaaagcagcttTCCGACAAAGTGCGGAAAGCAAAGACTGCCACCGACATCAAGAACAACCCCTTCGAGGTGAAGATCAACAGGAAGAAGTTTGACGTCCTGGGGCGGAAAACTAGGCATGATGTGGGTCTGCCAGGTGTTTCCAGGGCTAAAGCCATCCAGAAGCGAAAAGATACGCTGCTGAAGGAATACCAGCTGAAAGGCAAGTCCAATAAGTTCATCGATAGACGTTTTGGGGAATATGACACCAAAATGGCTCCAGAAGAGAAGATCTTGAAGAGGTTCGCCCTGGAAAGACAGCGGAACCACGATAAGAAGGACAAGTATAACCTGAATGAAGAAGAGGAGCTGACCCATTACGGACAGTCCCTGGCCGACATCGAGAAGCTCAATGACGCCGTCGACAGTGATAGTGACACCGAGGAGAGGGGCCTCCTGTCAGCTGAGCTCACGGCGTCACACTTCGGAGGTGGGGGCCTGTTGCGGAAGAAGGCTTTTGGAGAGAAGACGGACGATGGCGGCAGTCATCAACCCAAGTCTCGTCAGGAGCTGATTGAGGAGATGATTCTGAAGTCAAAGCAGGAGAAGCGAGAGcgacagacacagaaagaagaAGCACAGGAGCTGACGGAAAAACTCGACAACGACTGGAAATCTATCCAGAGTCTTCTGGCTCACAAGACCCCCAAGTCTGAACGCAAAGAGGAGGAGAAACCAAAGGTGGATGAGTATGACATATTTGTGCGGGAGCTGGGGTTCGAGATGAAAGCTCAGCCCTCTGAGAGGATGAAGTCGGAGGAAGAGCTGGCCATGGAGGAGCGAGAGCGTCTTCAGAAACTGGAGGCAGAGCGCCAGCGCAGAATGCAGGGAGATGTTGAGGAGGTCACGACCAAGAAGGTCTCCCATCTGTCTGCAGACGACCTGAACGACGGTTTCATCCTGGATAAAGAAGACCGCCGCGCTCTTTCATACCAAGATGGGAAGTGGAACATAGAGGAGGAGATGGAATCTgggaaagaagaagaggaggaggtggaaggagaggaggaggtggaggaggaaggagaggagagtgatgaggaagaggagggggagtcagatgaggatgaggaggaagatGATGAGGGTTCGGATGACAGCCACTCGGACTTGGAATCGGAGAATGGCAGTGAACAAGAAGGAGATGACAAAGTAGTGTCTGGGAAGGAGACGGCCCAGAGCGCAGCTCCGAATCCCctgagtgaggaggagagagcAGCCCAGCAAGAGGCTGCAAAAGCTGAGCTCCCGTACACCTTTGCAGgTTATTTCAAAACAAGGaaattatttgGCTTTCTTTTGGAATATGTCGGAGAACTGGCAACCAGAAACCCACCTGAGCTGTTGACTGTAAACAAACTCATCCCGCACTTGTACGGCCTGTGCCAGATGTTCCCTAGTGCTGCCTGCAAGTCCCTGCAGTCGATGCTAAGTGACAGTGCCCATGACATGGAGGAAGCGATAGAAGTCAAAGGGCGCACGGCTTTTCCTGACCTCGATATGctaATCTACCTGAAAATCGCAGCATTGTTATTCCCTACGTCAGATTTCCGGCATCCCGTCATAACACCAGCGTTGGTGTACATCAGCCAGGCACTCACAAAGTGCCCTGTCACCACACCAGAGGATGTGACCACAGGGCTCGTGCTCTGTTGCCTCACTGTAGAGTACATCTCTTTCTCCCAGCGGTTTGTCCCCGAACTCGTCAACTTCCTCCTCGGGGTCCTTCACCTGGCTGTCCCCAACAAAACCGCATTAGCTTACACTCTGGTACCACCCTTCAAGGCCACGGGGAAGAGCGGTGACCTGCTGGTTgtgaaaaatgcaaaagcagCAGAGTCGTGGACAATGAAAAAACAGCCCCTGTCTGCTGTCTATGGGCTGCACTTCACTGATGAATTGGATAGAGACCATTTCAAGTTGTCTTCTTTGGCTACATGTTTGGACCTTGTGAAACGCTGTACAACGTTGTACCGATCCTTGCCTGCCTTCTGCAAGATTTTTCAGCCCATAGGAACTCTGCTTTCCAAACACCTTCCTGTAGAAATGTATCCCAGACACCTGCAGGATCTTCACCATGAGATTGTGGAAGCCATAAAGAGCAGTCCAACATCGTTCGCACCTCTAGTGTTTGAAAGAAGGAAGCCTATTCCTTTGAAATTATTTACACCCAAAATTGTGGAAGTTCTGGACTACGGGAAGAAACGGGGCTGCAACAAGCAGGAAAGGGAACGGGAGAGGCTGCAGCACAAGTATAAGAAGGAATTCAAGGGAGCTCTGCGGGAGATTCGCAAGGACACCAAGTTCCTGGCCAGGCAGCAGCTGTCTGAAGTCATGACCAGGGAtgtggagaggaagaggaaggtgAAGGAGCTCTTTGGCAGCCTGGCGACGCAGGAGGGGGAGTGGAAGGCCCTGAAGAGGAGAAAGAACAAGAGCTGAAGCTGCTCACATTGATGTTCTCTACCCTGGAGTGTTTCTGGGCCTGATGTCATCTAGTACATTATCTAAAGAATTTGGGATCAAGTTCGTTCTTATCCAGTGTAAAAGGCAGATTTTGCTGCACCAGCAGTTTCCGTGGTAGAATCATAACTGTTTTTTATGAAAATTGCTGCCGTCTTCACTTTTAAACTTAAGCAGTGTcttttaaacacacagccatCCAAATTATGTAAATCAGCTGTATGGTGAGTGCTGCTGTAAAGAAACGCCGATGTCGGCATcattactgttttttaaaataaattaacattgaaaAGTTGAAAGGTTTCATACAGATCTAAGAAATGgagcttcatttttatttcatttatttgtattttttcataatgaACAAAGGATTCACCTGAAATAGTCTCTCTCACTGATGTGAAACCTCTCTTCATTGGCCCGTATATTGAAAAAACACTCATCCCCCGAGGTTATGTGGTAATTGCCTCCCAGGCCGTTGATATTGAGACAGATGTTGAAGCAGAAGTGTCCCTATTTGAAGCCATCGTGAAAATTCAGTAGTAAACCGTAAACCGTTACATTAACCGTAAAAAAAAGTTATCGGAGAGCAGAGATGATTTCGATTCGAGCGCTGACTGCAGAATGAAACTCTGGGGCCCCTCCCGAGCacctgtgcagtgcagtgctgctgACGTAAGTGAGGAGCAATGGAAGATGAGACCACATCGGTCGTGGGAtgactatatatttaaattcagaaGGGTTTGTAATTACTTCTCAATCGTTCACAGAAATATTTTCATGAAGCCAACTTGCTGTCAGACATTTCAATTTGGTATAGTGGCCAAACCAAGTGACCAATCCACTTTATGCAATCTAGAATATTACTTCCCATGGTCCTCTACTATAAAAATTCATGACTGCAAGTCTTGACTTTTGTGCCTCACCTGTCAAGAACATCACCAGCCAGAAGTATATGTAATGGAATATCAGTTCAAGAGGGTGTACATGTTTAACGAGATCATTAGTTTAAATGAAGCTCTGGTGGCCTCAGTACTTACACTGCTTAACTTGTAGTTGCAAAGCCCTAAACAGAGTTGTGTATGAAGTCTTCCCATCTCACTATGCTGGTGCAATGTCATCACAATGTTGCAAAGATGCTTATTTTCTAGTGTTGTTTGATCCCCAGTCCAAATGCATGCCACAGTAACCTGTCACTTTTGAGGTGACCAAATAGTATGAACCATTCTGAGAGTGAAACTTCTTAATCATTTGCAAATTCCCTACATTTTTGCTAGTGGTGCTGCAGCTTTTTGAATATTCCAGATGCATTTTGATCAttgttttatgtacagtacTTGCATACTGCACatctattaatattttgttattgttctctGGAATGTGTGTGGAATGGTGAGGGGGTGTGTGGGTGGAAATCCAACACACAACCAACGCTGCATTGAAGTCAAGCTTTATTAAGAGGTTACACTCTAGTACttggtatatatgtatgtgaacgATCTGTCTGTTTGTTATAAATGGGGAGGGTTGGGGGAACAAGTGGGGGAATATGTTTTCATTCACAGGAGGCCAAGTAAACCATGCCTTAGTGAGGGGCGGGTCTGGTCTTCAGAGGGCTTTTGCAGGCATGCTGGTCAGTGGGTTCTCAGTCTGTCACTTTGGTGGTCGTGTGGGTTTCCACGGAAACATGAATCCCTGCATTATACTCCTAACTGGTACTTGTATTACTTTTGGAGCCACCCACCTGAGATGTTTTCGATGCCCAGCCTTTTCTCTTCGCCTTCCAGCAGCTTCCTGTAGGTGGCGATCTCTGCGTCCAGTTTCAGCTTGATGTTGAGCAGCTCCTGGTAGTCCTGGAGATACTTGCTCATCTCTAGCTTGGTCTCGCAGAGCTGGCACTCGAGCCGGTCAATGAGGTCCTGCAGGTCCGACACCTTGTCCTGATGGCTGAGCTCCATCTCgtccagctgctgctgcagggcGCTGTTGCGGCTCCTCAGCACGTCGATCTGGTTCTGCAGGTCGATGGCCTGGTTCTGGAAGATGCTGATCTCCTCCCTCATGCTCTTCATCTGGTCGTCGTGCTGGCTGGCGTGCACCTTGAGCTTGTCGAACTTGCTCTTGTACCACTTTTCGGCCTCCTGGACATTGCGGGCGGCCAGCTGCTCGATCTCGGCCCTGATGTTGCGCAGGTAGGCGGCCAGGTCGGGACGGTCGGAATCCAGCTCGGCGGTCACCTTGGAGGACTCTATCTGCTTCACGAGGTCCGCCACCTCTTCGTCGTGCAGCTTCTTCATGAACTCGATCTCGGCCACCAGCTGCTCCACCCGTTTCTCCAGCTCGGCCTTCTGCAGGGTGGCGCTGTCCACGTCCTGCCGGAAATCGCGCAGGATCATCTCTGCCTCCTCTTTAAGTGCCAGCTCCTCTTCGACCTTCAGTCTCCACATCTCCACATCCTCCTCGATGTAGCCTCTCTCGATGTCGGCGGCTCCCTTCTCATTCGTCAGGCTCTCGATCAGCTCCCTCATTTCCTTAAACTTCTGCTCGTACTCCTCGGCGATGCCGGTGGGGCCCCCTTTGTTGCGGGCCTGCAGGGTGGCCAACTGTGCCCGCAGCGTGGCGTTCCTCTGCTCCAGAGACTGCACCTTCCCGATGTAGCCAGCGAACTTGACGTTCAGCTCCTGCATCTCCTCCTTCTCATTAGCACGGTGCTGGTGGATCTCCGTGCCCAGCACCACGGCGGTGCCTTGGTATCCCGAGCGGCCGCGGTTGTAAGAGGACGACCTGCAGCGGGAGGGCGAAGGGCTCTGAACTCGCATCCTGCTGGAGCCGCTTACGCTGAGCGTTTTCTGGCAAAAGGACGTACTTCTCATGGCTACTGATGTT

Function

GO:

id name namespace
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14766 NOP14, UTP2; nucleolar protein 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97279 lncRNA upstream 54878 14960272 ~ 14961505 (+) True G77958
TU97076 lncRNA upstream 1616187 13399908 ~ 13400196 (+) True G77796
TU96941 lncRNA upstream 2801862 12209013 ~ 12214521 (+) True G77673
TU96938 lncRNA upstream 2838894 12177228 ~ 12177489 (+) True G77670
TU96937 lncRNA upstream 2845062 12170098 ~ 12171321 (+) True G77669
TU97337 lncRNA downstream 172493 15204674 ~ 15221655 (+) True G78007
TU97343 lncRNA downstream 196712 15228893 ~ 15232199 (+) True G78012
TU97364 lncRNA downstream 274869 15307050 ~ 15308646 (+) True G78032
TU97394 lncRNA downstream 492449 15524630 ~ 15534087 (+) False AMCG00010116
TU97443 lncRNA downstream 621807 15653988 ~ 15654643 (+) True G78100
AMCG00010102 mRNA upstream 15627 14978146 ~ 15000756 (+) True AMCG00010102
AMCG00010099 mRNA upstream 275414 14700320 ~ 14740969 (+) True AMCG00010099
AMCG00010098 mRNA upstream 344981 14656485 ~ 14671402 (+) True AMCG00010098
AMCG00010096 mRNA upstream 502290 14489911 ~ 14514093 (+) True AMCG00010096
AMCG00010094 mRNA upstream 568832 14440450 ~ 14447551 (+) True AMCG00010094
AMCG00010109 mRNA downstream 52921 15085102 ~ 15099005 (+) True AMCG00010109
AMCG00010110 mRNA downstream 179824 15212005 ~ 15217546 (+) True AMCG00010110
AMCG00010111 mRNA downstream 407810 15439991 ~ 15442927 (+) True AMCG00010111
AMCG00010115 mRNA downstream 460442 15492623 ~ 15514695 (+) True AMCG00010115
AMCG00010116 mRNA downstream 492265 15524446 ~ 15534046 (+) True AMCG00010116
TU96770 other upstream 3315302 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 3860914 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 13652549 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 13681333 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 13688819 1322618 ~ 1327564 (+) False AMCG00009844
TU97434 other downstream 608780 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 1025350 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 2191701 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 2213456 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 2242206 17274387 ~ 17277998 (+) True G78396

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000211_00295491_00297840.mRNA True 1389 mRNA 0.58 3 CI01000211 295368 ~ 297894 (-)