RNA id: TU97287



Basic Information


Item Value
RNA id TU97287
length 783
lncRNA type read_through
GC content 0.43
exon number 2
gene id AMCG00010101
representative False

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 14991919 ~ 15032181 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGGGCATTGGTTCTTCATTTGTAAAAACTCTAAATGTTCGGCAAGTGTCAAGATGCATCTCCAGATCCATCAAATAAGGGCAGACcatgttatgtttgtttttatacatgaGATGGCATTACTAACTGCTTAATTTTAGACTGCTGCATGATTCTCTAGTAAGTCTGTGGAAGTGTTAATCTGCTCTAAGCCTGTTTTGTGTGAAGTCCCTCTTGGCTTTCTCCAGTGCATGCAGACACTGTGCTTTGTGATGAGCTTCCCCTTCGGACTGCTCGGTGCCTCCCCCTtagttgaatttttttttttttttttttttttTGCATTGAAGTCAAGCTTTATTAAGAGGTTACACTCTAGTACttggtatatatgtatgtgaacgATCTGTCTGTTTGTTATAAATGGGGAGGGTTGGGGGAACAAGTGGGGGAATATGTTTTCATTCACAGGAGGCCAAGTAAACCATGCCTTAGTGAGGGGCGGGTCTGGTCTTCAGAGGGCTTTTGCAGGCATGCTGGTCAGTGGGTTCTCAGTCTGTCACTTTGGTGGTCGTGTGGGTTTCCACGCTGCGGGTCACAGAGGTGGTTCTTTCCTCTGTGACTCCACggactgaggagagagagagagagagagagaacagtcaCTTCCATTATTTGCAGATCTTCTCTTTAAGccagaaaaacaatacactcGAGTTTTGTAAACTGGCAAATGTTTCTGTGGGAGTTATATAGGAACCTACACTGACATATATGTCACATATCAAGGCCTGGTTCATTGCGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU97279 lncRNA upstream 30414 14960272 ~ 14961505 (+) True G77958
TU97076 lncRNA upstream 1591723 13399908 ~ 13400196 (+) True G77796
TU96941 lncRNA upstream 2777398 12209013 ~ 12214521 (+) True G77673
TU96938 lncRNA upstream 2814430 12177228 ~ 12177489 (+) True G77670
TU96937 lncRNA upstream 2820598 12170098 ~ 12171321 (+) True G77669
TU97337 lncRNA downstream 175303 15204674 ~ 15221655 (+) True G78007
TU97343 lncRNA downstream 199522 15228893 ~ 15232199 (+) True G78012
TU97364 lncRNA downstream 277679 15307050 ~ 15308646 (+) True G78032
TU97394 lncRNA downstream 495259 15524630 ~ 15534087 (+) False AMCG00010116
TU97443 lncRNA downstream 624617 15653988 ~ 15654643 (+) True G78100
AMCG00010099 mRNA upstream 250950 14700320 ~ 14740969 (+) True AMCG00010099
AMCG00010098 mRNA upstream 320517 14656485 ~ 14671402 (+) True AMCG00010098
AMCG00010096 mRNA upstream 477826 14489911 ~ 14514093 (+) True AMCG00010096
AMCG00010094 mRNA upstream 544368 14440450 ~ 14447551 (+) True AMCG00010094
AMCG00010093 mRNA upstream 573112 14407608 ~ 14418807 (+) True AMCG00010093
AMCG00010109 mRNA downstream 55731 15085102 ~ 15099005 (+) True AMCG00010109
AMCG00010110 mRNA downstream 182634 15212005 ~ 15217546 (+) True AMCG00010110
AMCG00010111 mRNA downstream 410620 15439991 ~ 15442927 (+) True AMCG00010111
AMCG00010115 mRNA downstream 463252 15492623 ~ 15514695 (+) True AMCG00010115
AMCG00010116 mRNA downstream 495075 15524446 ~ 15534046 (+) True AMCG00010116
TU96770 other upstream 3290838 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 3836450 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 13628085 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 13656869 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 13664355 1322618 ~ 1327564 (+) False AMCG00009844
TU97434 other downstream 611590 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 1028160 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 2194511 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 2216266 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 2245016 17274387 ~ 17277998 (+) True G78396

Expression Profile