RNA id: AMCG00010109


Basic Information

Item Value
RNA id AMCG00010109
length 5768
RNA type mRNA
GC content 0.41
exon number 8
gene id AMCG00010109
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 15085102 ~ 15099005 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCCAACTCTTAGCAGTTTCAACTCAACAAGGACCCTGGTCTGACCCAACCTCTGTCTGTAATAACGCAGGACTTCAAACATGCAGTGGACACTTTcagcattattttatatactatataaCCAATATGGAGGGCTTTGCACTGAATTTTACAATGGAACGGCACAGcagcatacaaataataacagctCTACTAATATTGCAGGTCATAGCCACAGTCTGCAAGGCATTGTCCCGAAAAGGAATATAACAGCATCCCTGAGGCCTGGGAAGCTAATTGGAGACACAGTGACTGGAATATTGCCTGATACCAACAGTACAGTCGATTATAAAGCAACTACTCCGGtgacacagacaaacaatgGCTCCTCAGAAACCAGCAGCTCCAGAACAGTGTTAGATGAGAAGAGGACTCAGAATGAACTGAGAAGAATGACTGTTGGAAACAAACTTCCAGGACAGACATACATCCGAAGAAGCGCCAACAAACCCACCTTTGAAACAGCCAGGggaaaaaattgGTGTGCTTATGTACACACCAGGCTCTCACCCACAATTGTGATCGACCCTGTGGCATCCTACATGCCTGTTGCTACTGAGCCGTGCTACTGGAGTAGTGGGGGCTGCCCTGAAAGGTATCAGGTGATGACTCGTCCTGCCTACAAGATGAGACATACAATAGTCACCTCACTGGAATGGAAATGCTGCCCAGGGTATATTGGCTCACTGTGCCAACCCAATGGTGCACAACTTCTGACACAGCTCAGACGAGTTGAAAGCAACTCAGCCATGAGAACAGCATCGGATGAAAAACAGCAAAGCACCAGCTCTGAATTAGATGAGAAAATGGCCGATCAGATGTCCAGCCAAGAGAAGAAGATCAACATGTTGCAGAAGAAGATGGACAATGTGACCAACAATATGAACAACATGAAGACTGTGCTTTACTCACTAGAGGGGAAAATTAATGAAGGGAAAGGGAAAGACCTGCAATCCACCCTGAAAGCTCTCAAGACTAAAGGAATTCAGGATCGCATAAGAGAAATTGTCCAAGAACAAATCAAGTCTTCCCAAAATCTAATACAAGAAACCATTGCTCAGCTATTCAAGACAATGTCAAGGTTGACAGAAGAACTGGAGAACACCAAGGAAACGGTAAAGCAATTAAATGGAACTATGGCTATAATGTTGGGGTCCCAAAAATCCATTGAagagaacaacaacagaatGGTGACTGACATCCAGGGGCTTAAAGATCAAGCCATTGCTTTAAAAGGTGATATCACCACTTCGAGTTCCAATATAACCAGAGAACTAACTGGTAAATATTACTCCCTAGAGGAAAAATTTGCCCttgaaaaacaagagaaagtAGTTTTCTATGACACCATAAATCACACCCTATCTCAAATAAAAGACATGCAGGGACAGTTAATTTCCGGAGAGGCAATACATGAATCTGTAGTGCTTGAAAGCCAAGGTTCGGAGTCAGAGAACCTCACTAAACATGTTGCTTTTCTTGGTGAcatggttaaaaaacaaacactgctgaTACTGCAGCTCCAGCAGGAAATATATACCCAAGATATTAAGATAAGCAATCTCACCAGTGTCATGGGGAGGCAGAGGAAGGTTGCACAGATGACTTGTGAAACGATGGCTATCCAGTGCAAACAAGATCTACAGCCCCAGCTGGAGGAAATTAAAGGTCATATTAATGTTCTGAATAAGACGCTGTGCGACACAGTCCTGCCGTTGGATGACATGATAAACGTCATGGAAGAAAAGATAAGTCATGTATCTTATGAAGTGGAAGAGCTCAAACCCATCATTGAGAAAGATACATCCATGAGCAGTGATGGAAGGAGCGACCACACCGCAGAGCTCTCAGCCATCAAGAGCAGGATTGAAGGTCTGTCCTCTACCTTAGATGGTCTGAGTTCCAGCATCAAAGATGTGGTGCGAAACCAGGAGGAACTCAACAATCAAACCAAGGATAAAGAAGACCAGTATCTGATTGGATGCCGTGCTGAACTAGAGGATGCTCTTAATGACACCATGACAGTAATTAATAATGCCATAGATTCTGTCAAAGACAATTACTATGGCCTTGAGGGCAACCTGGAAAGCACAAACAGACAGCTCAGTGAAATTTCAAATGACTTTGAGGAAAAACTAAAGAACTCAACAGCTTTGAACCCGCAGCTAGACTACCTGAATTCATCTGTCCTcgcattgcaaaataaaatggagatgCTTGATAACATTCTAGGTGCAATTGGTGTGCTTTCAGAGGATGCTATCAGAGATCCAGAAAAGAAAAGGCCACCTAACCTTGTCCAGCTGTCCCAGATATTGAAAGAAGCGGTCTCCACACTCGAAGAGCACAAGACAACAATCACCCACATAAAAGAATCCCACTCAAATTCTTCTGTAGATTTTGGAACATACGATATACGACTCCAGAATGTTGAATCCAAGGTAAACTTGCTGTTCCCCAATGCCAGCTCTATAGTTAAGCTAAAAAAAAAGCCACCACCTGAGGGACTGGCATGGAAATACAAAGAATTGAACAAGCTGGTACAGGAGCTAAGTGTAAAGTCATTCAACTTGACAAATGACATTTTGTGGGCAAAGGAAAATGCATCGAAAGCTTGGGATGTATGCCAAAATCTGTCCAGGTCAGTGGATATGATGCAGGAAAATGCTATTCAGGGTtgcaaggaagaaaaaataaacctcacTCTTCTCCAAGAAGAACTCAAGGGAATCCTTCAGCAAGACCAAGGAGATATCAGCAAACTAGATGTGGCAAACCCTACACTCTACTTAAGTGCTGCTATGTCCAGCATCTTCAAGGATGTCACAAAGCTTCAAAGTGATGTCAAGCAGCTCAACACAAAGCCAGAAGCGATGCTCGAGCTCATACTGAACGCTAGTTCTGTACTAGCTGGGAGGAgccagagaaacacagacaatgTCATAGAACCAGAGCTGGCCAGCTGCAGCAGCTCCCCCTGTCAGAACGGCGGTACCTGCATCAATGAGAAGAGGGGCTACGTCTGCGCTTGTCGGCCCCCGTTTGGAGGCGTCAACTGTTCTGTCAAGCTGGTCAATGAAAGCGTCCTTTTAAATGATTTCTCCAAAGGCTCTTACCGCTACGCCCCGATGGTCACGTTCTTTGTGGCACACACCTACACCATGAGTGCTCCAGGGGCAATCCGCTTCAATCACCTCTATGTCAACTACGGGGCTTCTTACTCTCCAGGTAGCGGCAAGTTTAGCATCCCTTACTTGGGGGTGTATGTGTTCAAATACACCATCGAGTCAAGCAGCCCACAGGTCTCTGGGTATCTGGTTGTAGATGACGAGGACAAGCTGGCCTTCCAGTCTGAAGATGCCACCGCCACCACCAGTAGTGGCAGAGTTATCACTGGGGATGCGGTACTGGAGCTCAATTATGGTCAGAGGGTTTGGTTACGTTTGGAAACGGGCTCGATCCCTGCAAAGTACCCCCCAGTCACAACCTTCGGTGGCTACCTGTTATACCGCACCTAGGAATGGTATCATGCTGACTAAGGcctaaataaaatcaaacctttgacctGTCGCAAATGACAAATTGTACCTTATCGCATTTTCATTTACACATcttagaaagtggcttctggtTTCAGGTTTCTACCCTGCCCTGCCTTTAAAAATTTTAAACTTATTATCTTTTCCCTGGATAAATACTATTATGGTTTAAACTAAAGCATCTATACCCTTtaagggtaaaataaataaatgaaatgtaatcttgTAATTATGTACCCTATGTGCATAGGCTACATGTTTGTGTATGTCTTTTTAGCAGTGCCAATATATTGTACAGAAATAGATGAACAAATTATGAGAGTTAGGCTACATTAAGTCTTTACTGGTATCCCTCAATGTGATGACTGTAttggaaaacacagaaacacaaactggtaaatttcaatgtaaaaatattgcCACTAGAGGGTACTAGAGGCTTTGACCCAAAACCAAACCTCTGACATttgtcatttctgttttttttacacattgttgaagatttattattactattccaAGATGACACATACAATATCAATTACCTTTTCCTGCACCTGAAGTTAATAAGACGGAGACGATTAGAAACAGGCAGACCGATCTTCTCCACAGAAACACGGGGTGAGCGGGGAAGGGGCCTGGTTGTGTTTAGCACCATCTTGTATTGCAGAGTTCCAACACCTGtcttttgaagaaataaaatgcaacactgaatgtcttcaatttaaaatggaCAGCTGGAAAATGTAAGTTAAAATCTATGGAATCTGAATCTTcccagtgtgcatgtgtgatcctaaagagaaattacacaaaatcagcaggcaGTATCAAGTACATGCAGGTGTACATTTTGATTGCTACatgagctttttaaaatgatctaaTTCTAAACtatgacactttttattttccttttagaatgtaaaataacattgattttTACCTTTATGACACCGAGTGCTCTTTATTTTCGTTATTCTTATTATCTGGAGGAAGGCAATTGTATGAAAATTGGAAAATACAGAACTCATGTCATTGTTTACACATGCTTTAGGGCCCAGTATCTGAAATGCCCCTTCACTGTGTGTTTGCCATCAATGCAATCAGAATGGGATTTCAAATTGGCAACAGTATGAagatatcaaaatgtattaaagcttTTGTTTCCATCACCGCCTGCTTTCTCAGCAGTTCAGTTCCAAACCCCATTTACATAGAGCTACAGTAACATCAGCAGTCAATTAGGCTCCATGGTAACCTATTGCCACTCATTTATCTTCTGCATCCCGTAACAGCTGTGAAGCAGACGTGACAAGCCAAATACAATTCAAACAGAAGGACATGTTCCAGATGTAGCGCTGAGCTGCCAGGTGTTTACTTACAGCTAATTGTTGTTTTACACTTGGGAATTGATCTGTAATGCTGGTGATTTCTGAAATGATACACTCGTTCCgggtttgtttaatttctttgttaTACCCAATAGCGTTATGTACCAGTGccaaaccaaaacagaaaataaaggataAATGTCTCTATTACTACTTTGTATACACCAACTTAGTGAGTTTTTACGATGGCcagtatttaacattttccaaCAATTATTAAGGTAATTGATGTTTACCTTTCAAGCTGACTGTAATCTACTGCTTCAACTCTTGTGCCAGCATAGTTCAACTGAACTCCATAACAATACAAACTGCTAATatacaaccaaaataaaaatacctgaCATGAATAGAAGCATAATCATACACGTATAACAGTGAATGATGCAGAATGTGTCTGATACATTACAAAAGGATATAAGGGATACAGATTTTAGTgcccacagaaaataaatgaataaaatagatGATATCATTCCAGTTCTTCAAAGTTCAAGACAAAGGCTACATTATTCCACTTTATCTCTGTAATGGAATAATACATCCTTTACAAATTGCAGCTGTTGTTTGAGTCAGTCAATAAAGAgatcaaacataaataatgccCTAATGTTGAATAATATATGAAGAATATTTATGGCCCAGTAGGGGGAATTAAATATTCAGGTCATATACAaactctttaaataaaatgtacgtATTATATTGATGGCAAAACAGAATTATTGGGCCACTTGGAGATCTTACAAAGGTCTTATAAATACATATCGTTGACTATAGATTAAAACTTATTAG

Function

GO: NA

KEGG:

id description
K24247 MMRN; multimerin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97274 lncRNA upstream 37247 15004034 ~ 15047855 (+) True G77954
TU97287 lncRNA upstream 55731 14991919 ~ 15029371 (+) False AMCG00010101
TU97279 lncRNA upstream 123597 14960272 ~ 14961505 (+) True G77958
TU97076 lncRNA upstream 1684906 13399908 ~ 13400196 (+) True G77796
TU96941 lncRNA upstream 2870581 12209013 ~ 12214521 (+) True G77673
TU97337 lncRNA downstream 105669 15204674 ~ 15221655 (+) True G78007
TU97343 lncRNA downstream 129888 15228893 ~ 15232199 (+) True G78012
TU97364 lncRNA downstream 208045 15307050 ~ 15308646 (+) True G78032
TU97394 lncRNA downstream 425625 15524630 ~ 15534087 (+) False AMCG00010116
TU97443 lncRNA downstream 554983 15653988 ~ 15654643 (+) True G78100
AMCG00010101 mRNA upstream 52921 15016383 ~ 15032181 (+) True AMCG00010101
AMCG00010102 mRNA upstream 84346 14978146 ~ 15000756 (+) True AMCG00010102
AMCG00010099 mRNA upstream 344133 14700320 ~ 14740969 (+) True AMCG00010099
AMCG00010098 mRNA upstream 413700 14656485 ~ 14671402 (+) True AMCG00010098
AMCG00010096 mRNA upstream 571009 14489911 ~ 14514093 (+) True AMCG00010096
AMCG00010110 mRNA downstream 113000 15212005 ~ 15217546 (+) True AMCG00010110
AMCG00010111 mRNA downstream 340986 15439991 ~ 15442927 (+) True AMCG00010111
AMCG00010115 mRNA downstream 393618 15492623 ~ 15514695 (+) True AMCG00010115
AMCG00010116 mRNA downstream 425441 15524446 ~ 15534046 (+) True AMCG00010116
AMCG00010117 mRNA downstream 435992 15534997 ~ 15558177 (+) True AMCG00010117
TU96770 other upstream 3384021 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 3929633 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 13721268 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 13750052 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 13757538 1322618 ~ 1327564 (+) False AMCG00009844
TU97434 other downstream 541956 15640961 ~ 15642841 (+) False AMCG00010119
TU97557 other downstream 958526 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 2124877 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 2146632 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 2175382 17274387 ~ 17277998 (+) True G78396

Expression Profile