RNA id: TU97434


Basic Information

Item Value
RNA id TU97434
length 1881
RNA type TUCP
GC content 0.44
exon number 1
gene id AMCG00010119
representative False

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 15628345 ~ 15642841 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGTCATAACGACACCTGCTCAGCCTCTCAGGGCGGTGGGTTTGCAGCCAGTGAGGATGCCCCTGCTTTTTCCCAACCCGACTCATGTGCTCAGCAAGCCCGCCCTGCCTTTCAACGCCCCAGCTCTCCTGCCCAGCGTCGCTCCCAGGAAGCTGATGGTGAGCCCAGAAGGCGCCATCTTAAACGCCATCCAAAGTCCCGGCTCCAGTCTACTGCCCGTGTCCAAGGCGGTGGCCACGGTGGTGGTGACTCCCAGTTCCAGTACAGGGCGAGTGCTGCCCACCGTGTTGACAGACAATCCCCCACCTTCGTCCGCGGGAGATGTGGGAGACTCCAGTACCTGAAGCTGTGGGGAGGCGTGTCACAGCGCTGGGGAACAGAGGCTCGAGCCAATCAGATCCCACAGAATGGATGCTCAGGCCCTGCAGATTTTCAAATAAAGATAATGCTGGCATTCCTAATCAATCTGTTGTTTCtgtgaatatattatttgagTTTGGCAGAATTGGAAAGGAAAAACACGCACTGGGGATTGAGCCGTCATCGGTGATGGCAGCAAACGCAGAATATACAACCATTCTGCTTTAGACAAATAAAGCTGCTGTGAGCTGTTTACCCACCGCAGTGTAATAATAAATCCCTTGAACATACAGTTTGAAATGTGTTCTCTTTTGAAGGTATAGTACTGTTTTCTCAATCTggattcaaatattttcatctAGAATATGTGATCTTTTTAAAACTCAGTCTCCTTTTTCTGGTGCAAACCCTTCTAAAGTCTCTTTCCCCTGGTTGTGCAGATGTTCTTGAGCCAGTAACAATCAAAGAGCGTGGAATGCTActaatttttttaatcaggtCAAAGATTGAGGTGCTTTGTTTGGCAGGCGGCAGATCTGTTGTTTACAGACTATATAGCTGCTTTGTTTTTGATGGGGAAGTAGATTTAAGGGGAAAATATAGGGTAATCCATCCATGAAATATCTACTCACCAGTCTTCAGGCTGGGCAGCACACACAGAAAGGTTAAAGATATCCGAGACTCAGTTGTACTTGAATGGCAGACAGTAGGCCAGTCACAAGCTGCAGCCTATTGCTCTCAGTTTTTGAGCTCgggttttaaataaattgaattcaaCTGACGGTAGGGTTACCCCCCCATATAAACAGGGATGTAACATGAAATCTCACACCTCCTCTGCAAAGTCCTTCTCCTTTTAAGACCAATTACTACACTGCTCTATTTGCTACTGTATTGTGCCCTTGTTTAGAAGTATACAAACATTGAAACGTATTGATGCTACAATATAGGGATTTTTCGAATGTACGAGATACAAAATTGAACAGACTGGTGACCACGATATATAGGCTTCATCCTTAGGTTCAGTGTAACCTCTTGAGATTAAAGGGGGCTCTGTCGGACTCCATTGATAGACTGGACTGCGTCTGCACATTGTCTGGGCTCACTCAGTGAAAAGTCCACTTCATATTGCAGTTCTCATTGCAGTCCAGAAATAAGACGTACAAGATGCGCTGCAAACCTTTAGGAaagtttgtgtttcatttcagaTTCTCTGCATTCTTTCTTCAAATTCTGCATTTTTTCAAGAGTCTAAACTTTGCTTTACCCAACAGATTAGCATCAGCACTGAGGGGATTTGTTTGCCTTctgattgttttccatttctctgCTAAAACCCGAGTTTTAAACTGCCTCTTTTAAACAGGGCACCATCCGAACATCAATCCAGCTGCAAGATGTTGAACATCAACAATTGTTTGAACCCATCCTACTGAACAAATGTATGAAACTTTAAGgtgttatttatgatttctgTTTACataatgtatagattttttaaatgtattttattaggtTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97394 lncRNA upstream 106874 15524630 ~ 15534087 (+) False AMCG00010116
TU97364 lncRNA upstream 332315 15307050 ~ 15308646 (+) True G78032
TU97343 lncRNA upstream 408762 15228893 ~ 15232199 (+) True G78012
TU97337 lncRNA upstream 419306 15204674 ~ 15221655 (+) True G78007
TU97274 lncRNA upstream 593106 15004034 ~ 15047855 (+) True G77954
TU97443 lncRNA downstream 11147 15653988 ~ 15654643 (+) True G78100
TU97476 lncRNA downstream 77338 15720179 ~ 15723894 (+) True G78127
TU97478 lncRNA downstream 86299 15729140 ~ 15735727 (+) True G78129
TU97635 lncRNA downstream 822723 16465564 ~ 16547492 (+) False AMCG00010144
TU97689 lncRNA downstream 1029645 16672486 ~ 16672909 (+) True G78299
AMCG00010117 mRNA upstream 82784 15534997 ~ 15558177 (+) True AMCG00010117
AMCG00010116 mRNA upstream 106915 15524446 ~ 15534046 (+) True AMCG00010116
AMCG00010115 mRNA upstream 126266 15492623 ~ 15514695 (+) True AMCG00010115
AMCG00010111 mRNA upstream 198034 15439991 ~ 15442927 (+) True AMCG00010111
AMCG00010110 mRNA upstream 423415 15212005 ~ 15217546 (+) True AMCG00010110
AMCG00010124 mRNA downstream 57258 15700099 ~ 15709506 (+) True AMCG00010124
AMCG00010125 mRNA downstream 105284 15748125 ~ 15800521 (+) True AMCG00010125
AMCG00010127 mRNA downstream 247617 15890458 ~ 15912424 (+) True AMCG00010127
AMCG00010134 mRNA downstream 299768 15942609 ~ 15943250 (+) True AMCG00010134
AMCG00010128 mRNA downstream 329043 15971884 ~ 15984826 (+) True AMCG00010128
TU96770 other upstream 3939880 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 4485492 11149626 ~ 11155469 (+) True G77423
TU94664 other upstream 14277127 1360536 ~ 1363834 (+) True AMCG00009851
TU94663 other upstream 14305911 1333967 ~ 1335050 (+) True G75807
TU94657 other upstream 14313397 1322618 ~ 1327564 (+) False AMCG00009844
TU97557 other downstream 414690 16057531 ~ 16060087 (+) True G78198
TU97783 other downstream 1581041 17223882 ~ 17225340 (+) False AMCG00010164
TU97792 other downstream 1602796 17245637 ~ 17246988 (+) False AMCG00010160
TU97800 other downstream 1631546 17274387 ~ 17277998 (+) True G78396
TU97819 other downstream 1701578 17344419 ~ 17353488 (+) True G78410

Expression Profile