RNA id: TU97792



Basic Information


Item Value
RNA id TU97792
length 685
RNA type TUCP
GC content 0.38
exon number 4
gene id AMCG00010160
representative False

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17245585 ~ 17247150 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGCTGAGTGATCAAGACTCCTGAAGCTCAGACAATACTCGACAAAAGCAACACAATGAAGACAGCTGCTGTGGTCGTTCTTGCCGTTCTCCTGGTTGCTGATATCGAAGgAATGCCATCCATGAATAAGCTTCGATGCCGCTGTGCTGATGCAGGAGTTGATTTCATCCCACCAAGGCAAATCGAGAAGTTGGAAATGTTTCCCACCACCTCCACATGCGAGCGAGTGGAGATAGTCATCACTCTGAAAGACAATGCAGGGAAGAAGTGCTTGAATCCAACATCAAACTTTGCAAAGAATTTCGTCAAGAGAGCATTAAAATTACAGGCGTGAAACAACATGAAGTAACAGCCCCATTAACTTCTACAATTCATCGCAGATTGCAAAACCCATTTCTACAGTAAAAGTTAAGAAAACTGAATGTGTGTGAATATGTTGTATTCGTAAATAgctaatatgtaaattattcattttttatgaacCATAAATTATTTCTTACACAAAGCTATGCCCATTGACAATATACATGAATGTGATCCGTCTGAACACTGAACATAATGTGCACATTTGGAGAAAAAGCTTACTGTACTAAAGAGAACATGCACTTAAAAGGTaaataactgtatatatatattttgacctAATACTGTGTCCAAggattttcttctcttttgaaaatcatgct

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU97789 lncRNA upstream 4152 17239050 ~ 17241485 (+) True G78385
TU97785 lncRNA upstream 16792 17226891 ~ 17228845 (+) True G78381
TU97781 lncRNA upstream 23531 17220036 ~ 17222106 (+) True AMCG00010164
TU97728 lncRNA upstream 182725 17054873 ~ 17062912 (+) True G78334
TU97709 lncRNA upstream 353037 16892229 ~ 16892600 (+) True G78316
TU97796 lncRNA downstream 8234 17255222 ~ 17255429 (+) True G78392
TU97971 lncRNA downstream 273279 17520267 ~ 17520854 (+) True G78529
TU97972 lncRNA downstream 273279 17520267 ~ 17520650 (+) False G78529
TU98002 lncRNA downstream 547452 17794440 ~ 17845546 (+) True G78546
TU98069 lncRNA downstream 729186 17976174 ~ 17977305 (+) True G78607
AMCG00010164 mRNA upstream 20299 17220036 ~ 17225338 (+) False AMCG00010164
AMCG00010163 mRNA upstream 52287 17187429 ~ 17193350 (+) True AMCG00010163
AMCG00010153 mRNA upstream 470922 16769582 ~ 16774715 (+) True AMCG00010153
AMCG00010154 mRNA upstream 483879 16757802 ~ 16761758 (+) True AMCG00010154
AMCG00010151 mRNA upstream 513358 16722444 ~ 16732279 (+) True AMCG00010151
AMCG00010168 mRNA downstream 4259 17251247 ~ 17261003 (+) True AMCG00010168
AMCG00010162 mRNA downstream 47079 17294067 ~ 17303416 (+) True AMCG00010162
AMCG00010161 mRNA downstream 57992 17304980 ~ 17311881 (+) True AMCG00010161
AMCG00010167 mRNA downstream 68557 17315545 ~ 17317008 (+) True AMCG00010167
AMCG00010166 mRNA downstream 70185 17317173 ~ 17334410 (+) True AMCG00010166
TU97783 other upstream 20297 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 1185550 16057531 ~ 16060087 (+) True G78198
TU97434 other upstream 1602796 15640961 ~ 15642841 (+) False AMCG00010119
TU96770 other upstream 5544556 11700706 ~ 11701081 (+) True G77541
TU96625 other upstream 6090168 11149626 ~ 11155469 (+) True G77423
TU97800 other downstream 27399 17274387 ~ 17277998 (+) True G78396
TU97819 other downstream 97431 17344419 ~ 17353488 (+) True G78410
TU98227 other downstream 1672923 18919911 ~ 18921444 (+) True G78743
TU98291 other downstream 1840341 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 1891015 19138003 ~ 19139647 (+) True AMCG00010216

Expression Profile