RNA id: AMCG00010176


Basic Information

Item Value
RNA id AMCG00010176
length 3007
RNA type mRNA
GC content 0.50
exon number 19
gene id AMCG00010176
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 17455468 ~ 17465089 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTAAGAGCAGGATGGACCAATACATCTGACTAAAGTCTATCTGGTATTGCACACACATTTGAGTTCTGCTGAAGAGTCTCGAGTCCCAACTCCAAATGTGGAAGAAGATCCTACTTTGTGGGTTAGTGGGGGCTGCTGTTCTTACGGTGGGGCTCCTGATCGGGCACTATGGTATCACGAAGAGCTCATCTCCAGATTGGGTGGGTGCTGTGTCTCGGGATGTGGACGAGAGTATGATTGAGCAGTTCATCAAACAGGTGGATAACAAACAAATTGAGGAGAATCTGAGAGAGTTGACCAAAGTGCCACATATGGCCACGAGCCAGGGAGATGTGCAACTGGTCCAGTACATGCTGGACCGATGGAAGGACCCAAAGACAGGTCTTGACGATGCCTGGAAAGATACATATAAAGTGTACCTGTCATTCCCCGATGACAACACTCCAAACAATGTCACTGTAGTTTCTTCTACCAACTCCGTGCTGTTCACCTCAAGACTCAAAGAGAAAGATTACACTGAGGACCAGAGACACCCGGACATTGTCCAGCCCTATGCTGCCTACGCCCCTGCTGGAAACCCAAGGggAAAGCTTGTGTATGCCAACCAGGGCACGGTCAGTGATTATGAGTTCCTGAACGAAACGCTGAACCTGACTGGTACCATTGCTATTGTGAGATATGGAGGAGCAGGCAGAGGTAACAAGGCAATAAACGGCGCCCCCTTTGGAGTGATTGGAGTGCTGGTGTACACCGATCCGAAGGACATTAATGATGGGAAGATGTCAGATGAGAACGAGACCTACCCCTACTCCTGGTACCTACCCCCATCTGGGGTGGAGCGAGGGGGTTTCGCTCAGGATTTTGGAGATCTGAGGACTCCATACCTGGCCGCTAAAGATCATACATACAGGATACCAGAAAGCGATATTAAAGGGCTCCCACCTATTCCCATGCAGCCTATTGGGTTTGAAGATGCATATACTTTGATCTGTGCACTGACTGGACCAGATCCACCACCAGATTGGAAAGGATCTTTCAACTGCAGCTACAAACTGGGCCCTGGATTTGATCTCAACTCTAAATTTCCCGACAGCGACGTACAAATGAACATTTACAACAAGTGTGTACTCAAGAACTCTGACAACGTGATGGGAGTGATTCGAGGCAGCGTGGAGCCAGACCGCTACATTCTCTATGGCAATCACAGAGACAGCTGGGTCCACGGGGCCATAGACCCCAGCAGCGGGACGGCCGTGATGCTGGAGATCACCAGGGTCCTGGGGAAGATGGTGAAAGAAGGGAAGTGGAGGCCACGCAGGTCCATTATTTTCGGAAGCTGGGGGGCAGAGGAGTTTGGTCTGATCGGCTCCACCGAATACGCAGAGGAATATTACAGCAAACTGAGGGATCGCACAGTCGCCTACATAAATGTTGATATATCAGTATTTGCCAATGCTACCCTGAGAGTCCAGGGCTCTCCTGCTGCCCAGAGTGTGGTGTTTACCGCTACCAAGCAGGTGAAGACTCCTGGATCTCAGACTCTATCCGTGTATGACAACTGGATTCAATATTTCAACCGCAGCAGCCCTACTCATGGGACAATCCCCCTtCTGGGCTATATGACTGGGGCTGGAAGTGACTATGCTGCTTTTATCCACTTCCTGGGCATCACTTCAATGGATATCGCATACACATATGACAGGAGCAAAACAAAGGCTCGCATCTACCCGGCTTATCACACGGCCTACGACACCTTTGACTACGCCGCCAGATACATAGACCCAGGGTTCACTAGTCACCAGACTGTGGCGCGAACGGCGGGCAACGTGCTGCTGCGCCTGGCCGACAGCCTGCTCATCCCCTTCAAAGCCAGCGACTATGCCGAGACCCTGGAGCAGTTCTCAAAGACTGCCTTGGATACTTACAATGTCATACTGACTGGGAAAAACATCGATATGGTGCCTTTAATGAATGCCATGGCAAAGTTCAAATCAGCCGCTTCTAACCTGGAAAAACTCATCAGGGACTCCGACCTGACCCTGGAGACGCCTCTGAAGGTGCGCAGGATCAATGACCAGCTCATGTTTATGGAGAGGGCATTTATCGATCCTCTGGCCTTCCCTGACAAACAGCACTTCAGGCATGTGATCTGGGCCTCCAAGTCATCCCGTGTGCCCACCTTCCCTGGGCTGGCCGACGCCTTTGACCAGGCCCAGAAGAGTGACTCCGCCCAAGACTGGCAGCAAGTCCACAGACACCTGTCCATAATCATCCAGGCCATAGAGGGCGCTGCACACGCCCTAGAAGAGGTGATTTAGAGAGAGCGTCATCATCCACACAGGGTCTTCCTGGTGCTGCTTGGCAGGCAAGTTTCAAAGGAAACCACTCCACACTACAATATTACTCCCTCACCAGAAAATGTCTCTTCTTGCACTTTTCACTTTTTGGGGgattttaataaagaaaggCAGTAAATACTATTGGTTTCctttgaaaacatgaattttGTCTTTCAAAATTAACCTGTTTGAACCTGAATAGCACACTTATTACAGTTGCTGAAGCTGAACACCTCCCAGTTGACTCCACCCCATCGGTCCTCAGGCAGTCTCGTTCCCTGTGAAACTCTGTGAATGGCACTTCCTGGAATGGCTGGAGTAGATCCCAGGCTTTAGGACTCATCCTGCTATCCCAGACTGTATGAGGGCTGCCCCACTGGCTCATTAAGACTGGGAAatacattagaacataagaacgtttacaaacgagaggaggccatgctacccatcgtgctcgtttggtgggCAATCTTAGAGACACAGAGTACCACACCGGGTTCCCCTTTAATGATCTGGCCTCACTCCCATTTATATGCACTCACCCTACCTGTATCATATTGAACACGGTCATAATCCTAACTGAAAAACACTTGGCTGCTGTACAATCCCCTCgaggaatacaaaatatactgaATATTAATTAGAATACAAAGAACaatccaaac

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K01301 NAALAD; N-acetylated-alpha-linked acidic dipeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97796 lncRNA upstream 200039 17255222 ~ 17255429 (+) True G78392
TU97789 lncRNA upstream 213983 17239050 ~ 17241485 (+) True G78385
TU97785 lncRNA upstream 226623 17226891 ~ 17228845 (+) True G78381
TU97781 lncRNA upstream 233362 17220036 ~ 17222106 (+) True AMCG00010164
TU97728 lncRNA upstream 392556 17054873 ~ 17062912 (+) True G78334
TU97971 lncRNA downstream 55178 17520267 ~ 17520854 (+) True G78529
TU97972 lncRNA downstream 55178 17520267 ~ 17520650 (+) False G78529
TU98002 lncRNA downstream 329351 17794440 ~ 17845546 (+) True G78546
TU98069 lncRNA downstream 511085 17976174 ~ 17977305 (+) True G78607
TU98099 lncRNA downstream 593630 18058719 ~ 18077267 (+) True G78635
AMCG00010177 mRNA upstream 15121 17434441 ~ 17440347 (+) True AMCG00010177
AMCG00010175 mRNA upstream 24339 17419613 ~ 17431129 (+) True AMCG00010175
AMCG00010173 mRNA upstream 37262 17409064 ~ 17418206 (+) True AMCG00010173
AMCG00010174 mRNA upstream 48563 17403555 ~ 17406905 (+) True AMCG00010174
AMCG00010165 mRNA upstream 78530 17363171 ~ 17376938 (+) True AMCG00010165
AMCG00010187 mRNA downstream 201647 17666736 ~ 17701501 (+) True AMCG00010187
AMCG00010186 mRNA downstream 248026 17713115 ~ 17724874 (+) True AMCG00010186
AMCG00010185 mRNA downstream 274045 17739134 ~ 17774687 (+) True AMCG00010185
AMCG00010184 mRNA downstream 335634 17800723 ~ 17821178 (+) True AMCG00010184
AMCG00010191 mRNA downstream 480143 17945232 ~ 17954544 (+) True AMCG00010191
TU97819 other upstream 101980 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 177470 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 208480 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 230128 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 1395381 16057531 ~ 16060087 (+) True G78198
TU98227 other downstream 1454822 18919911 ~ 18921444 (+) True G78743
TU98291 other downstream 1622240 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 1672914 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 4581029 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 4892880 22357969 ~ 22378809 (+) False G79420

Expression Profile