Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00010177 |
| length | 1215 |
| RNA type | mRNA |
| GC content | 0.54 |
| exon number | 15 |
| gene id | AMCG00010177 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030129.1 |
| NCBI id | CM030129.1 |
| chromosome length | 41163702 |
| location | 17434441 ~ 17440347 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0006289 | nucleotide-excision repair | biological_process |
| GO:0000439 | transcription factor TFIIH core complex | cellular_component |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| K03142 | TFIIH2, GTF2H2, SSL1; transcription initiation factor TFIIH subunit 2 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU97796 | lncRNA | upstream | 179012 | 17255222 ~ 17255429 (+) | True | G78392 |
| TU97789 | lncRNA | upstream | 192956 | 17239050 ~ 17241485 (+) | True | G78385 |
| TU97785 | lncRNA | upstream | 205596 | 17226891 ~ 17228845 (+) | True | G78381 |
| TU97781 | lncRNA | upstream | 212335 | 17220036 ~ 17222106 (+) | True | AMCG00010164 |
| TU97728 | lncRNA | upstream | 371529 | 17054873 ~ 17062912 (+) | True | G78334 |
| TU97971 | lncRNA | downstream | 79920 | 17520267 ~ 17520854 (+) | True | G78529 |
| TU97972 | lncRNA | downstream | 79920 | 17520267 ~ 17520650 (+) | False | G78529 |
| TU98002 | lncRNA | downstream | 354093 | 17794440 ~ 17845546 (+) | True | G78546 |
| TU98069 | lncRNA | downstream | 535827 | 17976174 ~ 17977305 (+) | True | G78607 |
| TU98099 | lncRNA | downstream | 618372 | 18058719 ~ 18077267 (+) | True | G78635 |
| AMCG00010175 | mRNA | upstream | 3312 | 17419613 ~ 17431129 (+) | True | AMCG00010175 |
| AMCG00010173 | mRNA | upstream | 16235 | 17409064 ~ 17418206 (+) | True | AMCG00010173 |
| AMCG00010174 | mRNA | upstream | 27536 | 17403555 ~ 17406905 (+) | True | AMCG00010174 |
| AMCG00010165 | mRNA | upstream | 57503 | 17363171 ~ 17376938 (+) | True | AMCG00010165 |
| AMCG00010166 | mRNA | upstream | 100031 | 17317173 ~ 17334410 (+) | True | AMCG00010166 |
| AMCG00010176 | mRNA | downstream | 15121 | 17455468 ~ 17465089 (+) | True | AMCG00010176 |
| AMCG00010187 | mRNA | downstream | 226389 | 17666736 ~ 17701501 (+) | True | AMCG00010187 |
| AMCG00010186 | mRNA | downstream | 272768 | 17713115 ~ 17724874 (+) | True | AMCG00010186 |
| AMCG00010185 | mRNA | downstream | 298787 | 17739134 ~ 17774687 (+) | True | AMCG00010185 |
| AMCG00010184 | mRNA | downstream | 360376 | 17800723 ~ 17821178 (+) | True | AMCG00010184 |
| TU97819 | other | upstream | 80953 | 17344419 ~ 17353488 (+) | True | G78410 |
| TU97800 | other | upstream | 156443 | 17274387 ~ 17277998 (+) | True | G78396 |
| TU97792 | other | upstream | 187453 | 17245637 ~ 17246988 (+) | False | AMCG00010160 |
| TU97783 | other | upstream | 209101 | 17223882 ~ 17225340 (+) | False | AMCG00010164 |
| TU97557 | other | upstream | 1374354 | 16057531 ~ 16060087 (+) | True | G78198 |
| TU98227 | other | downstream | 1479564 | 18919911 ~ 18921444 (+) | True | G78743 |
| TU98291 | other | downstream | 1646982 | 19087329 ~ 19087754 (+) | True | G78794 |
| TU98308 | other | downstream | 1697656 | 19138003 ~ 19139647 (+) | True | AMCG00010216 |
| TU98991 | other | downstream | 4605771 | 22046118 ~ 22047542 (+) | True | G79382 |
| TU99036 | other | downstream | 4917622 | 22357969 ~ 22378809 (+) | False | G79420 |
