RNA id: TCONS_00009262


Basic Information

Item Value
RNA id TCONS_00009262
length 694
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_004677
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20342451 ~ 20353541 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTACACTTTAGCTAAaatgaggaagaggaagaggtCTACAAGTCGCAGCAAATGAAGAAGAACATGCGGGCGAAATAAGGGGATTCACTTGACAAGTGCACTGGATAATGgacaacagcattGACTCCCGAAGATAAAGGACTACCAGAGACAACAACAGCGAGGAACTTCTGCCAGGCAGCCTGCATGTCGGCTGTGAAAGCGGCGCCCATGGTGGAGGCAATCACGATTGTCAGGCAGTCGGCCAGCAGCTGAAACAGAGGAAAACAAACGGAACAGattGCTTTTGGTGTACCCTCAGACCAAGACCTACTTCTCCCACTGGAACGATCTGGCCCCCGGCTCTCCCTCTGTGAAGAAGCAGGGAAAGAAGATCGTCGGTGGACTCGGTCTGGCTGTTGATAAAATCGACGACCTTTTCAACGGCCTGCTGAACCTCAGTGAATTGCACGCCTTTCAGCTGAGAGTCGACCCTGCTAACTTCAAGCTCCTGTCTCACTGTCTGCTGGTGGTGTTCGCCATGCTCTTCCCTGATGACTTCACCGCTGAGGTCCATCTGGCCATCGACAAGTTCCTGGCAAGAGTGGCTTTGGCTCTGTCTGACAAATATCGTTAACTCTTCTGTTTAACAGCATGAACGTGGTTTTGTCGATATGGTCAACAgcatgtcaataaaaacaaacctAAAACCACT

Function

GO:

id name namespace
GO:0042744 hydrogen peroxide catabolic process biological_process
GO:0015671 oxygen transport biological_process
GO:0031838 haptoglobin-hemoglobin complex cellular_component
GO:0005833 hemoglobin complex cellular_component
GO:0005506 iron ion binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004601 peroxidase activity molecular_function
GO:0043177 organic acid binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0031720 haptoglobin binding molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101028-1 Predicted to enable several functions, including heme binding activity; oxygen binding activity; and oxygen carrier activity. Predicted to contribute to haptoglobin binding activity and peroxidase activity. Predicted to be involved in hydrogen peroxide catabolic process. Predicted to act upstream of or within oxygen transport. Predicted to be part of haptoglobin-hemoglobin complex and hemoglobin complex. Is expressed in intermediate cell mass of mesoderm and vasculature. Human ortholog(s) of this gene implicated in Heinz body anemia; alpha thalassemia; familial erythrocytosis 7; and hemoglobin H disease. Orthologous to several human genes including HBZ (hemoglobin subunit zeta).

Ensembl:

ensembl_id ENSDART00000149920

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010916 lncRNA upstream 76986 20263585 ~ 20265465 (+) True XLOC_004675
TCONS_00010733 lncRNA upstream 883166 19458809 ~ 19459285 (+) True XLOC_004670
TCONS_00009244 lncRNA upstream 954073 19385438 ~ 19388378 (+) True XLOC_004666
TCONS_00010732 lncRNA upstream 1071295 19267759 ~ 19271156 (+) True XLOC_004660
TCONS_00009224 lncRNA upstream 1201800 19139343 ~ 19140651 (+) True XLOC_004655
TCONS_00010919 lncRNA downstream 138078 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00010918 lncRNA downstream 138078 20491619 ~ 20500564 (+) False XLOC_004679
TCONS_00010920 lncRNA downstream 138078 20491619 ~ 20504801 (+) False XLOC_004679
TCONS_00009268 lncRNA downstream 139343 20492884 ~ 20495870 (+) False XLOC_004679
TCONS_00009269 lncRNA downstream 139343 20492884 ~ 20500329 (+) False XLOC_004679
TCONS_00009261 mRNA upstream 5177 20336070 ~ 20337274 (+) True XLOC_004676
TCONS_00009258 mRNA upstream 185437 20149305 ~ 20157014 (+) False XLOC_004674
TCONS_00009260 mRNA upstream 186142 20149707 ~ 20156309 (+) True XLOC_004674
TCONS_00009259 mRNA upstream 192179 20149311 ~ 20150272 (+) False XLOC_004674
TCONS_00009254 mRNA upstream 192893 20122256 ~ 20149558 (+) False XLOC_004674
TCONS_00009266 mRNA downstream 58752 20412293 ~ 20482061 (+) False XLOC_004678
TCONS_00009265 mRNA downstream 58752 20412293 ~ 20482061 (+) False XLOC_004678
TCONS_00009267 mRNA downstream 59023 20412564 ~ 20461752 (+) True XLOC_004678
TCONS_00009271 mRNA downstream 152656 20506197 ~ 20508359 (+) True XLOC_004680
TCONS_00009272 mRNA downstream 198649 20552190 ~ 20564678 (+) True XLOC_004681
TCONS_00009249 other upstream 438036 19866998 ~ 19904415 (+) False XLOC_004671
TCONS_00009250 other upstream 445524 19877842 ~ 19896927 (+) True XLOC_004671
TCONS_00009245 other upstream 954178 19388143 ~ 19388273 (+) True XLOC_004667
TCONS_00009243 other upstream 956896 19385426 ~ 19385555 (+) False XLOC_004666
TCONS_00009203 other upstream 1642829 18681423 ~ 18699622 (+) False XLOC_004646
TCONS_00009270 other downstream 145442 20498983 ~ 20499080 (+) True XLOC_004679
TCONS_00009286 other downstream 337817 20691358 ~ 20692013 (+) False XLOC_004688
TCONS_00009295 other downstream 1083805 21437346 ~ 21437458 (+) True XLOC_004691
TCONS_00009299 other downstream 1440461 21794002 ~ 21794116 (+) True XLOC_004694
TCONS_00009304 other downstream 2090088 22443629 ~ 22444772 (+) True XLOC_004697

Expression Profile

//