RNA id: AMCG00010198


Basic Information

Item Value
RNA id AMCG00010198
length 3630
RNA type mRNA
GC content 0.52
exon number 2
gene id AMCG00010198
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18214015 ~ 18218373 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CagtactccacactactgcccttGTCACTAGTTGTCTTCTTGTTATCAGTGTAGTATTGGCAATGTTCATTCTGTATTCTGAATGTCTATTTAATCTCCTGCAGGTATGTGAGAAGATGGCGTATGGTGAAGGAGTAGATGAGCAGTCTGTCATTTCCTGACATATAAGGATACCAAGCAGaacaaacagaattaaacaGATTGCCCACCCCAATCACCCAACCGCTTAATTCCCACCCCCACTGTACTTCGAAGCCGCTTGTGCCCTTCGCTCTCTCACTCTGGTGCTCCTGGACTAAGCGAGGAGCTTACACATGTACCAGATGGTACAGGGGGGCACCACCCCCGGCACTTTGACCCCTGCCAACAAGACGAAGCAGACCAAAGATGTGCGGCCGCTGGTGGGAGCCAGCGCGCTGGGGCTGGTGTTGGTCATCGCGGCAGTGGTGGCCTGGTGCTACTACACCGCCTCCCTGCGCAAGGCCGACCTGCTGCAGACCGAGCTGCTGGAGCTCAACCGTGACGGGTTCCTGATCCGAAACCAGGCCGGTGCCATCGTCTTCCGCATGGCCTTCAGGTCTGGTGCCCTGGACCTGGACTCCTGCTCCAAGGAAGGAGAGATCCTGAGTTGCAGCCAGTCGGACACGGGGAAACTGAACTTCTTCATCCAGACGGTGAAGCCCAAGGACACGGTGATGTGCTACCGTGTGCGCTGGGAGGAGTTCGTGTCTGACCGTGTGGTGGAACATGCCATGTCCTACAACGCGTCGCACTGGTATGGGGGTGCGGAGAGTAGTACCCAGCACTGGCCTATCTCCATCTCAGGGCAGCAGGCCCCCAAACCCTTTGTGACCGGTGATGTCTACTCCAACCGGGATGCCTTTGGGGGGATCCTGGAGAGGTACTGGTTGTCCTCCAGTGCGACTGCCATCAAGATCAACGACTCTGTGCCTTTCCACCTCGGCTGGAACGACACAGAGAAGACTCTGTACTTCCAGGCCAGGTACCGGGACACCCCTTACAAGCCTGCATCTGGGCGGCCGCCCTTCCCCGAGCTGAGTTACCGCGTGTGCGTGGGCTCTGACGTCACGTCCATCCACAAGTATATGGTGAGACGCTACTTCAATAAGCCCAACAAGGTTCCCTCTGAAGGCACCTTCAGGCACCCCATCTGGTCCACCTGGGCCCTGCACCGCACCGAGGTGAACCAGGAGAAGCTGCTGAAGTACGCCGCGGATATCAAGAAGCACAAGTTCAACTGCAGCCACCTGGAGCTCGACGATAAGTACACCAGCAGGTACGGGGAGTTTGAGTTTGACCTGGAGAAGTTTCCCAACGCCACGGCCATGTTCCAGCAGCTCAAGGCCGATGGGTTCCTGGTGACGCTCTGGACCCACCCTTTCATCAACTACAACTCCTCCAACTTCGGCGTCGGGGTGGAGAGGGGCCTGTTTGTCCGCGAGCCCACGGGGCAGCTGCCTGCCATGGTGCGCTGGTGGAACGGCATCGGTGCCATCCTGGACTTCACCAACCAGGACGCCCGAGAGTGGTACACCTCCCAGCTGCGGACGCTCAAGTCCAAATACGGGGTGGATTCCTTCAAGTTTGACGCCGGGGAGACCAGTTACCTGCCTCAGCAGTTCAGCACTCTGGTCACCCTGACCGACCCCAGCACCTTCACCCGGCGCTACACTGAAATGGCCATGCCTTTCAATGAGCGCGCTGAGCTGCGGGTGGGCTACCAGTCCCAGAACATCTCCTGCTTCTTCCGGATCATCGACCGGGACTCGGTGTGGGGCTACGAGCTGGGCCTCAAGTCCCTCATCCCCACCGTGCTCACCATCAGCATCCTGGGATACCAGTTCATCCTGCCTGACATGATTGGAGGGAACGCCTACCCGAACCGCACCGACGGATCCCAGACGCTGCCCGACCGGGAGCTGTACATCCGTTGGCTGGAGCTCTCGGCCTTCATGCCCTCCATGCAGTTCTCTGTCCCTCCCTGGGCGTACGACAGCGAGGTGATCAGCATCGCCCAGCGCTTCACCGCCCTCCATGAGACTCTAGTGGCTCCCCGAGTCCTGGAGCTGGCCGGGGAAGTGCTGGACACTGGCGATCCTATCATCCGCCCGCTCTGGTGGATTGCCACCGACGACGAGGCCGCCTACAAGATCGACTCGCAGTTCCTCATTGGCGACGACCTCATGGTGGCCCCGGTGCTGGAGCCGGGGAAGCAGGAGAGGGACATCTACCTCCCGGCGGGCCGGTGGCGAAGCTACAAGGGTGAATATTTTGATAAAGGGCCTATGCACCTCACAGACTACCCCGTTGACCTGGACGAGATTGCTTACTTTGTCTGGGTTCAGGGTGGATAGCGATGAAGCGGTGCGCTGCGTAGCGGGCCTTTTGTAGATCATGTTGAAATGGCAGCGTACTTCAGTCTCTTCCTGTAAGGCAAGGATCTGATTAACCAACTTAAGTTTCCATCAATGTAGCTGCAGCTAAATGTTCATTCATCTGATCTATTTTTGGGCTGAAGATGCTTCAGGAGTTCCACGTTGCTGATCTACCTACAGGATTCAGATCCTGGTTTCGTACAAGACCTCCAGAATCTATGTGCTGTGAAATTTCCACCAGTATGGTTATTCAGAGTTTAATCTTTGTACTCTGCCTTGTAGCTCAAGGAACACGTTCAACTAATGCTTAAAAGGTTCCGTTAACTGCCTCCAACAGGGCTAGGGGCTACATTAAGATTGCTATTGTACTTGACAGGACTAGATGGTTTGATGTTCTAATTCAGGCCTGGGCATCCCCAGTCCTCAAGGATCACAGTTGTCATTGCAGCTGAGCTCCTTAAGCCAGAAAAgttttatttaactaaataatgtttttccagTTCTTAAACCTGTGACTTAAGATTTGTATCCCTCCAGACCCGGAGTTAGAAACCAGTGCTCTAAAATTTATATTTAGGAATGCTTATGGCTTAATTCTTCATTAAGTGGTTACTATATGGAAATCGTACCAGTTTTATGTGTGATATTGGCCATTAGATAAGCATCCTGTTTTTACAATTGAGGAATGACAAATCGACAAATCCgcaatttgtgtgttttaaatgaagggTTTCCATAGTTTTCTGATGGGGGAACCCCAAAATATCACTATCAATACCAGCAGGGTGCCAGTTTAACCTCTgaatgtaatgcatttcaaatacacaattttaaattggtactactgacaaataaataaaccaatgcaATTCTATTAGTCTGGAAGAAACTTATATTTCAAAAGGTTGTTGAATTGCAAGGGGACTCCTGGAACTTCCCTGTGAGTTCCAGTTAAACTTTAATATTCAAGGTAAGCTGCGATACACAAAGACGGGAAGTGAAATTGGAATGGATTTAAAATTTCACCAAGTTTTGCTCACCCTGTGAAGAACAGACTTGAAACTCATCTCAGCTCGAGTCTGGAGTGGTGAATTCCatacctttttatgtttttaacgTTGGTTATCGGAGGTCAGTGGGGATCTTGCCAAAAGGGAAAATTAGCACAATGCTGATGTGTTAGCTCACATTAAtcaccagtgttttttttttttttttttttaaatcaatataa

Function

GO: NA

KEGG:

id description
K24727 MYORG; myogenesis-regulating glycosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98099 lncRNA upstream 136748 18058719 ~ 18077267 (+) True G78635
TU98069 lncRNA upstream 236710 17976174 ~ 17977305 (+) True G78607
TU98002 lncRNA upstream 368469 17794440 ~ 17845546 (+) True G78546
TU97971 lncRNA upstream 693161 17520267 ~ 17520854 (+) True G78529
TU98157 lncRNA downstream 232117 18450490 ~ 18450809 (+) True G78682
TU98243 lncRNA downstream 745150 18963523 ~ 18963725 (+) True G78758
TU98245 lncRNA downstream 752922 18971295 ~ 18971714 (+) True G78760
TU98257 lncRNA downstream 787916 19006289 ~ 19010099 (+) True G78772
TU98259 lncRNA downstream 787916 19006289 ~ 19009946 (+) False G78772
AMCG00010199 mRNA upstream 11577 18188178 ~ 18202438 (+) True AMCG00010199
AMCG00010200 mRNA upstream 36173 18170670 ~ 18177842 (+) True AMCG00010200
AMCG00010192 mRNA upstream 179864 18021692 ~ 18034151 (+) True AMCG00010192
AMCG00010197 mRNA upstream 204965 18006219 ~ 18009050 (+) True AMCG00010197
AMCG00010194 mRNA upstream 218638 17990788 ~ 17995377 (+) True AMCG00010194
AMCG00010201 mRNA downstream 459848 18678221 ~ 18684640 (+) True AMCG00010201
AMCG00010204 mRNA downstream 558083 18776456 ~ 18805818 (+) True AMCG00010204
AMCG00010203 mRNA downstream 632784 18851157 ~ 18866491 (+) True AMCG00010203
AMCG00010202 mRNA downstream 656389 18874762 ~ 18881791 (+) True AMCG00010202
AMCG00010212 mRNA downstream 852554 19070927 ~ 19080716 (+) True AMCG00010212
TU97819 other upstream 860527 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 936017 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 967027 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 988675 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 2153928 16057531 ~ 16060087 (+) True G78198
TU98227 other downstream 701538 18919911 ~ 18921444 (+) True G78743
TU98291 other downstream 868956 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 919630 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 3827745 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 4139596 22357969 ~ 22378809 (+) False G79420

Expression Profile