RNA id: AMCG00010199


Basic Information

Item Value
RNA id AMCG00010199
length 1533
RNA type mRNA
GC content 0.57
exon number 14
gene id AMCG00010199
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18188178 ~ 18202438 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGCTGGTTCTCTGGGTTCCTCTGCTGCTCTCCCCGGCCCTGGCAGGGGCCCATGTCCACGAGTTCACAGTGTATAGGATGCAGCAGTACAACCTTCAGCAGCAGAAGCATGGCTGTCGGGGGGCTCTGGTGGTAGCTGACGCTCGCACTGTGGAAGAGGCGGTCCTGACCTGGCGCTGTGTGGTCATGAGGCTGCCGGACTTTACTTTGGACCAGTACCAGGCCGCACGGCAGCAGAACGCAGCCTCTGTGCTTATTCTGGTGCCTGAAAACATCTCCTCTGTGCCTCAGGATGTCATCCAGCAGTTCATGCTGACCGAGGTGGCGGTGGTGTCCAACGACACGCTGATGCCAGTCTACGTTGCTGTGGAAGACGAGGAGCTGCTTGCGATGTACGAGGAGGTGAAGACCGCCACGCTGGCCCGCCGCTCCTCCTCTCTGCTGCAGGTTCTGTTCAGCGCGGTGACAGCCAGTGGGTTCCAGATGCTTGCTGGCCGTGACGTTCCCATCAAACCAATCAGTGATACCAGCTTCATTACTCTGGAGGGAACTCTTGCTGGACCCCAGGAAGAGCCGCAGACCATCGTCATTGCCGCCCATTATGACTCCTTTGGGATCGCACCTTGGCTCTCGTATGGGGCGGATTCCAATGCCAGTGGAGTGGCAGTCCTTCTGGAGCTGGTCAGACTCTTTCACAAACTGTACAGTGACCCCCGAACCCAGGCCAGGTACaacctccttttctctctgaCGGGAGGAGGAAAATACAACTACCAGGGAACTAAGCGATGGCTTGAAGAAAACTTGGACCACACAGAGTCAAGTCTGCTCCATGACAATGTGGCGTTTGTGTTGTGTCTGGACACGCTTGCCAACGGAGAGGGGCTCCATCTCCACGTGGTATCTTCCCGGTTCCCTTCGGTGAAGTTAGGGATGGTGCACAAGAAAATCAACCTCGGGGAGACGGTGCTGGCCTGGGAGCACGAACGCTACGGTCTGCATCGGATCCCTGGGTTCACCTTGTCCCACCTGGAGGACCCACAGAGCGCAGCGAGGGGCTCCATCTTGGACACAGTAGCTCAGATTGATATGAGGAAACTGAAGCGTAATACTGTCATTATAACGGAGTCCTTGGCTCGATTCATGTACAACTTAACTGAAAAGGAGGTCCAGGAGAGCCGCCTTGCCGCCCTGGTGTCTGCGCTGTCCTCGGTGCCGCGGGCCACCCAGCTGCTCGACCGGGAGCCCAGgcagctcctcctcctcgccTCCCTGGAGCAGCAGCTCAGCAGATACCTGCAACGCGTCCAGCGCCATGCCTTCCGCACAGACCGCCGAGATCCAGAAGTTGTGTTCTTTGACCAAATGAAACAGCCCATGACGATGTACAGAGTGAAGCCTGCAGTGTTCGATCTGTTCTTGGGAGCCTGTATTGCTGCCTATCTGGGAGTTATTTATTATGCCATTCAGAATTTTGGACACCTGTACTCAAAGGTCACTAGGACAGCCATGAAGCCGAAACAGCAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98099 lncRNA upstream 110911 18058719 ~ 18077267 (+) True G78635
TU98069 lncRNA upstream 210873 17976174 ~ 17977305 (+) True G78607
TU98002 lncRNA upstream 342632 17794440 ~ 17845546 (+) True G78546
TU97971 lncRNA upstream 667324 17520267 ~ 17520854 (+) True G78529
TU98157 lncRNA downstream 248052 18450490 ~ 18450809 (+) True G78682
TU98243 lncRNA downstream 761085 18963523 ~ 18963725 (+) True G78758
TU98245 lncRNA downstream 768857 18971295 ~ 18971714 (+) True G78760
TU98257 lncRNA downstream 803851 19006289 ~ 19010099 (+) True G78772
TU98259 lncRNA downstream 803851 19006289 ~ 19009946 (+) False G78772
AMCG00010200 mRNA upstream 10336 18170670 ~ 18177842 (+) True AMCG00010200
AMCG00010192 mRNA upstream 154027 18021692 ~ 18034151 (+) True AMCG00010192
AMCG00010197 mRNA upstream 179128 18006219 ~ 18009050 (+) True AMCG00010197
AMCG00010194 mRNA upstream 192801 17990788 ~ 17995377 (+) True AMCG00010194
AMCG00010193 mRNA upstream 214484 17969210 ~ 17973694 (+) True AMCG00010193
AMCG00010198 mRNA downstream 11577 18214015 ~ 18218373 (+) True AMCG00010198
AMCG00010201 mRNA downstream 475783 18678221 ~ 18684640 (+) True AMCG00010201
AMCG00010204 mRNA downstream 574018 18776456 ~ 18805818 (+) True AMCG00010204
AMCG00010203 mRNA downstream 648719 18851157 ~ 18866491 (+) True AMCG00010203
AMCG00010202 mRNA downstream 672324 18874762 ~ 18881791 (+) True AMCG00010202
TU97819 other upstream 834690 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 910180 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 941190 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 962838 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 2128091 16057531 ~ 16060087 (+) True G78198
TU98227 other downstream 717473 18919911 ~ 18921444 (+) True G78743
TU98291 other downstream 884891 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 935565 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 3843680 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 4155531 22357969 ~ 22378809 (+) False G79420

Expression Profile