RNA id: AMCG00010203


Basic Information

Item Value
RNA id AMCG00010203
length 2583
RNA type mRNA
GC content 0.59
exon number 15
gene id AMCG00010203
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 18851157 ~ 18866491 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTGCGGCAGAATGCTGGGAACAACCCAAATAAACTACAGTTCCCAGGTAATGTGCGCAGCGGCGTGTGACAGACGACCAGAACTGTTGTTGATGGTGTGACACTCAACATCCACAGTCACTCCGTGTTAGAGGTTCGCGTCCCGGCTGACTGCGCTGTGTACGCGGATGGACGACGCTGGGAGCCGCGGCGCGGCGGGGCGCTTCGTGGAGAGGCTGACCCTGGGCATCGCGCGCGTGCTGGACAGTCTTCCTGGAGTGATGGATGTGCAGTTGGTGGAGAGGGAGCCGGCAGAGCGCCACATGCTGCTGTCCTGGGAGCAGAAACACGACTGCGTCCTGCCGGAGGACCTGAAGGATTTCTATCTCACCATGGATGGCTTCCATCTGTCCTGGAGCTCCAAACTGGATGGCAAATCGTATACCTCTTTCCATCCATGTGAGCCACTCCCGCTGGGCTGTATGGTGGTAAACAGTGTGTCGAAACTGCTGCCCCTGTGCCAGTCTCCTGTGTACTCCCTGCCCAGCACCCCAACCCTGGCAGACCTGGACTGTGAGGAGGACAGAGAAGGGTTAGACTGCCAGCTACAGGAGCCGCATTTTGACTCCCGAAGTCGCATCTTTGAACTGGACCCCTGCAGTGGAAACGGCAAAGTCTGCCTTgtgtacagaaacacagaacCAGGGGCTGTGGCTGAGCAGTGCGAGGTGTGGTTCCTGGACCTGGCTTTGTACTGGCACTACCTAACCTCCTCCTTCACCGCGTACTACCGGCTGATGATCACCCACCTGGGTTTGCCCGAGTGGCAGTACAGATTCACTCCGTACGGACCCAGCCCCCAGGCCAGGcAGTGGGCCTGCCTGTATCAGCCCCTCACTACCCACTGTGACCTGCAGACGGACCCTGGGGAGCCCCTCCTCAACAAGCTGGATCCAAACAGGGCCTTCCGGGGCAAAACCAAGCAGCCCCTGCCCAAGAAGAAGCCCCCTGCCCAGGCTGGGGGGGGCACACAGAAGGCGGCAGTGGGCCCAGGGGGGGGGCGGCACTCTGGCACCAGGAAGTGAGGGATGTGTGGTTGGGCATTCTCACAGCATGCGAATCCCTCCTGAAGAAGCCCCATCAGCGATGGTGCTGGGGAAATGATGCTGCCTTCCCCAGGAGTGCTGCTCCCTCAGGGGGCCGGGCAGCACTGTAGCCCCTGCCTCTGTCCTCCCTGTGCCACAGCGGCCGTCTCCAGGCAGCCAAACGCCTCCCTTCTGCATGTCCAAGTCCTCCCTTGATTACTGCCTCAGAAAATCCATCAGACAGTGTTGGTACAGTATAGCCTTTGGCAAtgaaaACCTGTGGACTTGCGTTATCGCCAGCGGTGCGGGCTCCCCCAGAGAGCGGGTTAGTGTCCGTGCAGCTCTGCGCTGAGGATGGAGTGGTCATGGAGCGGCCTTTTCTGTCACCCGTTTTGGGTGGTGACCACTGTGGTCCTGGGGCTGGTGGTGAGGGCGCAGAGGAAACGGTCCTGGAGCCCCAAAGCTTGCCGCGTTGACCTGACTGGAAAGACAGCGATAGTCACAGGTGCCAACACAGGCATCGGGAAGTTCATCGCCCTGGACCTGGCTCGGCGGGGGGCTCGTGTCATTCTGGCCTGCCGCAGTAGGGAGCGCGGTCAAAGGGCGCTGGAGGATATCCGTGCCTGCTCTGGCAACGCCAACGTGCACCTGCGCCTCCTGGACACCAGCTCGCTGTCCTCGGTGCGGGACTTTGCCCAGCGCTTCACCCAGGAGGAGAAGCACCTGCACATCCTGGTCAATAATGCGGGGGCCTCTGGTTTACCCAGAGGGATAACACCAGAGGGGCTGGAGGTCTCCTTCGCCACCAATCACCTGGGGCCGTTCCTGCTCACCAACCTGCTGCTAGACCTGATGAAGAGCTCCTCCCCCGCCCGCATCGTGAATGTCTCCTCTACCAATCACTGGCGAGGGGAAGTGGACTTCTCCCACTTCCGGGGTGAGAACCTGAAGTACGTGATGGACAGCGTGTACAACCACACCAAGCTGCACAACATCATCTGCACCAACGAGCTGGCGCGCAGGCTGCAGGGTTCAGggGTGACCGCGAACTCACTGCATCCCGGAGTTGTGCTGACGGAGGTGATGAGACACTATAACTTCGTGGTGCAGCTGATCTTCAACATCATtggcttcttcttcttcaagTCCTCAGAGGAAGGAGCCGTCAGCTCCATCTACTGTGCCGTGTCGGAAGACGTCGAGGGCATCTCGGGGAAGTACTTCGACAGCGACTGCTCCCTCACGCTGCCCGCGCCCCTCGCCCAAGACCCCGCCCTCGCCACCAAGGACTGGGAGGTGTGCGAGAGGCTCGTCGGACTCTCCGGCCAATAGGCTCGCCGCCTCGGCAAGGACGGGCCCTTTGACCTCACACGTCAGAGCTGACTGAAGAGTAGGAGAGAACTTTCTGACCCGTTCTTCACCGGAGAAACAGACACTTCTTGTTTCTGCTTAGTTGTCATGGTTGGATTTTATAGGTTTTATGACTGCAATAAAACATCTGGTTTGATAAATAAGCAA

Function

GO: NA

KEGG:

id description
K16605 TPGS2; tubulin polyglutamylase complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98157 lncRNA upstream 400348 18450490 ~ 18450809 (+) True G78682
TU98099 lncRNA upstream 773890 18058719 ~ 18077267 (+) True G78635
TU98069 lncRNA upstream 873852 17976174 ~ 17977305 (+) True G78607
TU98002 lncRNA upstream 1005611 17794440 ~ 17845546 (+) True G78546
TU97972 lncRNA upstream 1330507 17520267 ~ 17520650 (+) False G78529
TU98243 lncRNA downstream 97032 18963523 ~ 18963725 (+) True G78758
TU98245 lncRNA downstream 104804 18971295 ~ 18971714 (+) True G78760
TU98257 lncRNA downstream 139798 19006289 ~ 19010099 (+) True G78772
TU98259 lncRNA downstream 139798 19006289 ~ 19009946 (+) False G78772
TU98262 lncRNA downstream 146911 19013402 ~ 19013758 (+) True G78774
AMCG00010204 mRNA upstream 45339 18776456 ~ 18805818 (+) True AMCG00010204
AMCG00010201 mRNA upstream 166517 18678221 ~ 18684640 (+) True AMCG00010201
AMCG00010198 mRNA upstream 632784 18214015 ~ 18218373 (+) True AMCG00010198
AMCG00010199 mRNA upstream 648719 18188178 ~ 18202438 (+) True AMCG00010199
AMCG00010200 mRNA upstream 673315 18170670 ~ 18177842 (+) True AMCG00010200
AMCG00010202 mRNA downstream 8271 18874762 ~ 18881791 (+) True AMCG00010202
AMCG00010212 mRNA downstream 204436 19070927 ~ 19080716 (+) True AMCG00010212
AMCG00010213 mRNA downstream 236377 19102868 ~ 19108097 (+) True AMCG00010213
AMCG00010214 mRNA downstream 250244 19116735 ~ 19119081 (+) True AMCG00010214
AMCG00010216 mRNA downstream 272168 19138659 ~ 19184069 (+) False AMCG00010216
TU97819 other upstream 1497669 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 1573159 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 1604169 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 1625817 17223882 ~ 17225340 (+) False AMCG00010164
TU97557 other upstream 2791070 16057531 ~ 16060087 (+) True G78198
TU98227 other downstream 53420 18919911 ~ 18921444 (+) True G78743
TU98291 other downstream 220838 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 271512 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 3179627 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 3491478 22357969 ~ 22378809 (+) False G79420

Expression Profile