RNA id: AMCG00010212


Basic Information

Item Value
RNA id AMCG00010212
length 2546
RNA type mRNA
GC content 0.37
exon number 4
gene id AMCG00010212
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 19070927 ~ 19080716 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTTGCTGTAATTTCTTatagaaatgtaatgcatactCCATTTGAAGTAGCATAATGttatcaatatttgtattttttttacagaaacaaatattgcaTGAAGCTaaattcactttttctttttaggtgAAATGGAGAAAGCACTTCTTGTAATTGTACAAGTTGTGTTGTTCCCTACTATTCCAGGATTATTCACAGTGGAAATGACAAACAACTCTTACTTGGCCGAGATTGGGGGTGTCATCACAATGGAGTGTCGTTTCCCTGCAGAGGATGGAGTGATCCTATCTGGGTTGAATGTCCACTGGCATCGCATCCAGTCTAGTGGCTCCCTGGAGGTTTACAGGCTGGTGAATGGACAGGAGGACCTCACCTTCCAGCATTCCCAATATAAAGGCAGAGTATGCCTGCAGAAGGAGAAGCTCCCAATGGGCCTGGCTGTGTTGCAAATATCAAATCTCAGCATCTCAGACTCTGGGAAATACAGATGCCTTATTGAACTCGGAGGAGCCGACTATAAAGAGTTTACTCTCACAGTGCGAGCTGcctataaaccaataaaaaaagacataagAAAAACCGAGGAGGACAACATGGTGGAATTGTCTTGTCAGTCAGAAGGCTACCCTTTAACCAGTGTTTTGTGGAGGGATGCAACTGGAAAGAAACTATCCATGAAAGCCAATACCACATATTTCAAAACTGTAAAGCACCTCTTCCACTTATCCAGTCAAGTCATTATCAcaacaaccaacaacaacacatacacCTGCACTTTTTTGGATGAGGCAGGGATGGGCTTTTCAGCCAGTTTTAAAATTCCAGATGATTTGCGGAATTCTACTGACTTCCACCTTgactacagaaacagaaacactttGACTACAGTTATGGCGATACTGATTTCAGCTCTAATACTTACAGTGGTCGTGGCCATCGTGGCATATCACAGGCTGAAAGGTAAATTCATGGTTTTGCCAATGTCACCATATAGCTCgtaataaaattataatgaattatgtattatttatttaatgtttaacatCCTCTAATGTGGGTTGACTGAATCGGCACTTAAAGCTAGGGTGAATCTGGGGCTTTTGTCACATTTGTGTACAGTTCTTAGAAGAAcattctatattctatattctatataatGCTTGAAAATTATTAGGAATATTAAACACATGAAATACTGAAACTCCTGAAGTGCTGCTCAGCTTTAGTACACTGTGCGGTAAAGAGTAAATAAGTTGTTCCCTGTATGTGTTTATTagaaagtaaaaagtaaaaagtgatTTGTGAGAAGTGAAGTGTTGCGGAAGCTACTGAAACCCCTTCAGTATTGTCCTCTGTAGCCATACAATGAAGTATATGATAAAGCTGAAGTATGACAGCCAATGGGACTTTTTTTTTGAGATTCTATGTGTTGTGAAATTCACTTGATTGTAAAcctcattttatgtttttctgtgtgaTATGATTCTGCAATTTCCTATCGTtttcaatgtgaaaaaataaaatatccccTTTTTTGGCCCGCCACTTTAGGGAATTTGACAACATCGCATTACAGATGTGTGGGTGGCACTTAAATTAGAATTGTCATGGCTCATAACCAAGCCTCACACTGATGCTAGTAATGAGGGAATGCACTtcttttgtaacatttatttcatagaatattattttttcagttgttgGAACTAAAGAAAGTCTTTTTCTTGTATGCACACAAACCAGCAGTGAAGTTTCTGTTTGACAGAAATGTCATACCCATTGTAAAGCATGGATATTaatgtgtgtttgctttggTCTAGTATCCTCTAGTCCTGGTGTCCTTGTTAGAATTGAGGAATGGATggattgaaaaatatatcattatattttagCCAATAAATTGGACTCTCTCTGCATAGAAATATAAGCTCAGTTGTAAATGGACTTTCCAGCATGTGAACTATCTGAAGTACACATTCAAGTCTACTACCAAAAGGTTAAGGGAGCACAAAATCAGCATTCTTGCTGATTGGCCATCACAATCTCCAGAAGAGTTTGGTATGaactgaatggaaaaaaatggtTGCATTCGTTCCAATTAACATGGGATCAGTAGTAAAATTTAATGAAGTCACATTGTAGATTTCTGATGTATGCCCCCGCAGGCTTGAATTTACAGTaacaaagttttaaaaagtgtagTTTTCAGTCACCCTACAAATGTAGTATTACAGTTTAGTTTACTTTTAACTGGCAGTAGTAATTTGCAACCTTGggttattacattttcaataagtTTGGTTGTTGTGTTCTTTCTTGGGTTTATTTCAGAGGGGGGCAGCTATTCTCCTCCCTCGACCACAGCTTCCCTTTTGTCAGCTTTATTAGAAGGACTCCAAAAGTGAGGCAaaagaattattatttttaattaactataaGCCTATGTCATGGAAGGTAACAAAGCTCagcttattatttatatacagtactgtgcaaaagttttaggcaggtgtgaaaaaatgctgtaaagtaagaatgctttcaaa

Function

GO: NA

KEGG:

id description
K06745 PDL1, CD274; programmed cell death 1 ligand 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98262 lncRNA upstream 57169 19013402 ~ 19013758 (+) True G78774
TU98257 lncRNA upstream 60828 19006289 ~ 19010099 (+) True G78772
TU98259 lncRNA upstream 60981 19006289 ~ 19009946 (+) False G78772
TU98245 lncRNA upstream 99213 18971295 ~ 18971714 (+) True G78760
TU98243 lncRNA upstream 107202 18963523 ~ 18963725 (+) True G78758
TU98458 lncRNA downstream 409941 19490657 ~ 19494085 (+) True G78939
TU98500 lncRNA downstream 548010 19628726 ~ 19629439 (+) False AMCG00010224
TU98631 lncRNA downstream 1201643 20282359 ~ 20282722 (+) True G79081
TU98641 lncRNA downstream 1386593 20467309 ~ 20467696 (+) True G79091
TU98660 lncRNA downstream 1550496 20631212 ~ 20631454 (+) True G79109
AMCG00010202 mRNA upstream 189136 18874762 ~ 18881791 (+) True AMCG00010202
AMCG00010203 mRNA upstream 204436 18851157 ~ 18866491 (+) True AMCG00010203
AMCG00010204 mRNA upstream 265109 18776456 ~ 18805818 (+) True AMCG00010204
AMCG00010201 mRNA upstream 386287 18678221 ~ 18684640 (+) True AMCG00010201
AMCG00010198 mRNA upstream 852554 18214015 ~ 18218373 (+) True AMCG00010198
AMCG00010213 mRNA downstream 22152 19102868 ~ 19108097 (+) True AMCG00010213
AMCG00010214 mRNA downstream 36019 19116735 ~ 19119081 (+) True AMCG00010214
AMCG00010216 mRNA downstream 57943 19138659 ~ 19184069 (+) False AMCG00010216
AMCG00010218 mRNA downstream 109166 19189882 ~ 19229691 (+) True AMCG00010218
AMCG00010217 mRNA downstream 149146 19229862 ~ 19245933 (+) True AMCG00010217
TU98227 other upstream 149483 18919911 ~ 18921444 (+) True G78743
TU97819 other upstream 1717439 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 1792929 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 1823939 17245637 ~ 17246988 (+) False AMCG00010160
TU97783 other upstream 1845587 17223882 ~ 17225340 (+) False AMCG00010164
TU98291 other downstream 6613 19087329 ~ 19087754 (+) True G78794
TU98308 other downstream 57287 19138003 ~ 19139647 (+) True AMCG00010216
TU98991 other downstream 2965402 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 3277253 22357969 ~ 22378809 (+) False G79420
TU99038 other downstream 3277253 22357969 ~ 22378809 (+) False G79420

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU324083 False 597 lncRNA 0.39 2 NW_019170990.1 16149 ~ 16934 (-)