RNA id: TU98308



Basic Information


Item Value
RNA id TU98308
length 1098
RNA type TUCP
GC content 0.37
exon number 2
gene id AMCG00010216
representative True

Chromosome Information


Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 19138003 ~ 19184069 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTTTTACTactcattacaaaaatatatattctgcctAGCATTTTAATCCGTCTTTGAACATGTTTTATGCAGTGGATACTGTCAggatttaattgcttaattacaGTGTTTAGGGTCTATGATGGGTCACAGCCATTGGccattaaagtttttattttgttatagctttctaattttgtgaaataatggTCCCAAAggtataatgtaaatgtaaattagcATTTCAGTTCACTATAACGTTTTCCCTAAGGATATACATGATTTATATCATAACTGGGGCCCTGTATTTTGTATGAAAtagtttaaaaacttttttctaAAAGCATGGTCTAGCCATAACCTGTGAAGTGAcgttatataatatataataatattgcttGGTAACAATTTCTAGAGGCAAATACAgctgattatttatattatttcaaaagctTGACCCCAACATTCTATTTTGCAAAAAATGTCACAGGATGTGAATAGAAGTTGGtgatctttacatttttgtagacCCAGGTTGGTACTAATCTTGGGCAACCCAATGTTAATTTATGAAaggtagtccaagactagtgctaattgaAACCAGCTGCCACTGTTTGAATCTCTAAAATGCACATCTTTCCTGTGGGCACAGGGCAATTTTGGCAGTGTGGAGATGTGCCGCTACGACCCTCTGCAGGACAGCACCGGAGAGGTGGTGGCAGTCAAAAAGTTGCAGCACAGCACCGCCGAGCACCTGCTAGACTTTGAGCGCGAGATTGAGATCCTTAAGTCACTTCAACATGACAACATTGTCAAATACAAAGGGGTGTGCTACAGCGCAGGACGAAGAAACCTGCGGCTGATTATGGAGTACCTGCCCTTCGGAAGTTTAAGAGATTATTTAATCAAGAACAAGGAAAGGATAGACCACAAAAAGCTTTTCCATTACGCGTCTCAAATATGCAAggtatttgcttttcttttgaaccTCACTGTAACgtacatgtatacataatcCTTCTCAATTTTTTTCTCAGACTATTTATTAACCCTGCTTGCATCATAAacaaggttaaaataaataaatgagattgtttttcacaaatgttACCTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU98262 lncRNA upstream 124245 19013402 ~ 19013758 (+) True G78774
TU98257 lncRNA upstream 127904 19006289 ~ 19010099 (+) True G78772
TU98259 lncRNA upstream 128057 19006289 ~ 19009946 (+) False G78772
TU98245 lncRNA upstream 166289 18971295 ~ 18971714 (+) True G78760
TU98243 lncRNA upstream 174278 18963523 ~ 18963725 (+) True G78758
TU98458 lncRNA downstream 351010 19490657 ~ 19494085 (+) True G78939
TU98500 lncRNA downstream 489079 19628726 ~ 19629439 (+) False AMCG00010224
TU98631 lncRNA downstream 1142712 20282359 ~ 20282722 (+) True G79081
TU98641 lncRNA downstream 1327662 20467309 ~ 20467696 (+) True G79091
TU98660 lncRNA downstream 1491565 20631212 ~ 20631454 (+) True G79109
AMCG00010214 mRNA upstream 18922 19116735 ~ 19119081 (+) True AMCG00010214
AMCG00010213 mRNA upstream 29906 19102868 ~ 19108097 (+) True AMCG00010213
AMCG00010212 mRNA upstream 57287 19070927 ~ 19080716 (+) True AMCG00010212
AMCG00010202 mRNA upstream 256212 18874762 ~ 18881791 (+) True AMCG00010202
AMCG00010203 mRNA upstream 271512 18851157 ~ 18866491 (+) True AMCG00010203
AMCG00010218 mRNA downstream 50235 19189882 ~ 19229691 (+) True AMCG00010218
AMCG00010217 mRNA downstream 90215 19229862 ~ 19245933 (+) True AMCG00010217
AMCG00010220 mRNA downstream 138697 19278344 ~ 19326725 (+) True AMCG00010220
AMCG00010221 mRNA downstream 199092 19338739 ~ 19360722 (+) True AMCG00010221
AMCG00010223 mRNA downstream 307690 19447337 ~ 19460145 (+) True AMCG00010223
TU98291 other upstream 50249 19087329 ~ 19087754 (+) True G78794
TU98227 other upstream 216559 18919911 ~ 18921444 (+) True G78743
TU97819 other upstream 1784515 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 1860005 17274387 ~ 17277998 (+) True G78396
TU97792 other upstream 1891015 17245637 ~ 17246988 (+) False AMCG00010160
TU98991 other downstream 2906471 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 3218322 22357969 ~ 22378809 (+) False G79420
TU99038 other downstream 3218322 22357969 ~ 22378809 (+) False G79420
TU99122 other downstream 3560095 22699742 ~ 22703374 (+) True G79475
TU99126 other downstream 3560162 22699809 ~ 22703409 (+) False G79475

Expression Profile