RNA id: AMCG00010218


Basic Information

Item Value
RNA id AMCG00010218
length 933
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00010218
representative True

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 19189882 ~ 19229691 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGCGCGCAGCTCCGCCCTCCACACACAGCTGCGATGCTGCGTCAGCGTCCTGGTTAAAGGGCTCGTTTCCCGCCGCGTCCCGGGCAACGGCGCCGAGCAGAGCAAACCGCTGAAGCATCGAGGGCGGCCTTCATGTGTCATCTACATACCAAATATGGTTCGGATTGAAAAATCCCCTGGCTTTGGCCTTTCGTTGGTGGCTGAGACTATAAATGGAACGTTCCTCAGTGCTGAACTGGCTTCCAACCCACAAGGCCAAGGAGACCCAGTTCAGCCAGAAGACCTCGGGAAGAACTGTGCCAAACTCTTGCTGGAAGAAATTTACAGAGTAAATTTTGAAGCCAGCTTCATAAGACTGATGGACAAAATAACCAACGGCACAACGATTGAAGTCAATCAAAcaggtACTGCCCTGTTTTATCAGCCAGGGCTTCTGTATGGAGGAGCAGTGGAGCATGATTGCAACCTCCAGCGCTCCATTGGCTACTACCTGGAACCTCTACTCGCATTGGCTCCCTTCATGAAGAGTCCAATCAGGGCAGTCCTGAGAGGCGTGACCAATGACCAGAAAGACCCATCTGTGGTGAAAAGAGGGATGCCCccaggtggaggaggagaggtGCTTTTTACCTGCCCTGTGCGGAGATGTATTAAGCCAGTGCAACTCTCAGACCCAGGAAAAATCAAGCGTATCCGAGGAATAGCATATTCAGTGAGAGTCTCTCCACAGATAGCAAACCGAATGATCGACTCAGCCAGGAGCATCTTAAACCTGTTCATTCcagacatttatatttacacagaCCATATGAAGGGAGTTCATTCTGGAAAGAGGCCCGCAGGTGCTGGCTGTCGGGCGCGTCTCCTCCTCCGCGCCGCTGTGCTCGCCCCCCGCCTGCACTCCGGTCACACGCTGCGGGCCGAGGAGACG

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005730 nucleolus cellular_component
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K11108 RCL1; RNA 3'-terminal phosphate cyclase-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98262 lncRNA upstream 176124 19013402 ~ 19013758 (+) True G78774
TU98257 lncRNA upstream 179783 19006289 ~ 19010099 (+) True G78772
TU98259 lncRNA upstream 179936 19006289 ~ 19009946 (+) False G78772
TU98245 lncRNA upstream 218168 18971295 ~ 18971714 (+) True G78760
TU98243 lncRNA upstream 226157 18963523 ~ 18963725 (+) True G78758
TU98458 lncRNA downstream 260966 19490657 ~ 19494085 (+) True G78939
TU98500 lncRNA downstream 399035 19628726 ~ 19629439 (+) False AMCG00010224
TU98631 lncRNA downstream 1052668 20282359 ~ 20282722 (+) True G79081
TU98641 lncRNA downstream 1237618 20467309 ~ 20467696 (+) True G79091
TU98660 lncRNA downstream 1401521 20631212 ~ 20631454 (+) True G79109
AMCG00010216 mRNA upstream 5813 19138659 ~ 19184069 (+) False AMCG00010216
AMCG00010214 mRNA upstream 70801 19116735 ~ 19119081 (+) True AMCG00010214
AMCG00010213 mRNA upstream 81785 19102868 ~ 19108097 (+) True AMCG00010213
AMCG00010212 mRNA upstream 109166 19070927 ~ 19080716 (+) True AMCG00010212
AMCG00010202 mRNA upstream 308091 18874762 ~ 18881791 (+) True AMCG00010202
AMCG00010217 mRNA downstream 171 19229862 ~ 19245933 (+) True AMCG00010217
AMCG00010220 mRNA downstream 48653 19278344 ~ 19326725 (+) True AMCG00010220
AMCG00010221 mRNA downstream 109048 19338739 ~ 19360722 (+) True AMCG00010221
AMCG00010223 mRNA downstream 217646 19447337 ~ 19460145 (+) True AMCG00010223
AMCG00010224 mRNA downstream 374927 19604618 ~ 19629011 (+) True AMCG00010224
TU98308 other upstream 50235 19138003 ~ 19139647 (+) True AMCG00010216
TU98291 other upstream 102128 19087329 ~ 19087754 (+) True G78794
TU98227 other upstream 268438 18919911 ~ 18921444 (+) True G78743
TU97819 other upstream 1836394 17344419 ~ 17353488 (+) True G78410
TU97800 other upstream 1911884 17274387 ~ 17277998 (+) True G78396
TU98991 other downstream 2816427 22046118 ~ 22047542 (+) True G79382
TU99036 other downstream 3128278 22357969 ~ 22378809 (+) False G79420
TU99038 other downstream 3128278 22357969 ~ 22378809 (+) False G79420
TU99122 other downstream 3470051 22699742 ~ 22703374 (+) True G79475
TU99126 other downstream 3470118 22699809 ~ 22703409 (+) False G79475

Expression Profile